Variant report

Variant	rs73590544
Chromosome Location	chr19:36185954-36185955
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:36183210..36186350-chr19:36190384..36192650,3	K562	blood:
2	chr19:36183040..36186694-chr19:36206545..36210008,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272333	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11546662	0.80[AMR][1000 genomes]
rs11546665	0.80[AMR][1000 genomes]
rs16970649	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17776834	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2227278	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2234360	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2234375	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2267585	0.86[AMR][1000 genomes]
rs2267586	0.86[AMR][1000 genomes]
rs2285420	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2871893	0.83[AMR][1000 genomes]
rs2871894	0.80[AMR][1000 genomes]
rs34562867	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3817622	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3893069	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4992668	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56849855	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57180990	0.86[AMR][1000 genomes]
rs58142685	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs58255615	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58496446	0.83[AMR][1000 genomes]
rs58952294	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61254015	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61351824	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61375471	0.83[AMR][1000 genomes]
rs73590543	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73590559	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73590561	0.82[AMR][1000 genomes]
rs73590564	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73590568	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73590576	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73590585	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73590591	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73590598	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73592416	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73592448	0.80[AMR][1000 genomes]
rs73599271	0.80[AMR][1000 genomes]
rs73599272	0.80[AMR][1000 genomes]
rs73599281	0.80[AMR][1000 genomes]
rs73599286	0.86[AMR][1000 genomes]
rs73599289	0.86[AMR][1000 genomes]
rs73600880	0.86[AMR][1000 genomes]
rs73600881	0.86[AMR][1000 genomes]
rs73600885	0.86[AMR][1000 genomes]
rs73600892	0.81[AMR][1000 genomes]
rs73600893	0.86[AMR][1000 genomes]
rs73600899	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73602803	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73602804	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73602806	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73602823	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73602827	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73602832	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73602833	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv543995	chr19:36139204-36203592	Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv911630	chr19:36149761-36290977	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
4	nsv458566	chr19:36156588-36265508	Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
5	nsv579422	chr19:36156588-36265508	Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
6	nsv911631	chr19:36169285-36290977	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
7	nsv911632	chr19:36174176-36288297	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36179200-36192800	Weak transcription	Right Atrium	heart
2	chr19:36183000-36193000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:36184800-36192600	Weak transcription	Placenta	Placenta
4	chr19:36185000-36186000	Enhancers	GM12878-XiMat	blood
5	chr19:36185400-36192600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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