Variant report

Variant	rs73590561
Chromosome Location	chr19:36198178-36198179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:36193425..36195138-chr19:36196726..36199415,4	K562	blood:
2	chr19:36139132..36140724-chr19:36197337..36199740,2	MCF-7	breast:
3	chr19:36195695..36198364-chr19:36200825..36204221,3	K562	blood:

Variant related genes	Relation type
ENSG00000011590	Chromatin interaction
ENSG00000126267	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16970649	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17776834	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2227278	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2234360	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2234375	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2285420	0.84[EUR][1000 genomes]
rs34562867	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3817622	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3893069	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4992668	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56849855	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58142685	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs58255615	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs58952294	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61254015	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61351824	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73590543	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73590544	0.82[AMR][1000 genomes]
rs73590559	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73590564	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73590568	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73590576	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73590585	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73590591	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73590598	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73592416	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73600899	0.83[EUR][1000 genomes]
rs73602803	0.84[EUR][1000 genomes]
rs73602804	0.84[EUR][1000 genomes]
rs73602806	0.84[EUR][1000 genomes]
rs73602823	0.88[EUR][1000 genomes]
rs73602827	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73602832	0.88[EUR][1000 genomes]
rs73602833	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv543995	chr19:36139204-36203592	Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv911630	chr19:36149761-36290977	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
4	nsv458566	chr19:36156588-36265508	Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
5	nsv579422	chr19:36156588-36265508	Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
6	nsv911631	chr19:36169285-36290977	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
7	nsv911632	chr19:36174176-36288297	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
8	nsv961286	chr19:36187862-36199437	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36194000-36199200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr19:36194000-36206600	Weak transcription	Brain Angular Gyrus	brain
3	chr19:36194000-36206800	Weak transcription	Right Atrium	heart
4	chr19:36194000-36206800	Weak transcription	Osteobl	bone
5	chr19:36194600-36200400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr19:36194600-36206200	Weak transcription	Right Ventricle	heart
7	chr19:36195400-36201600	Weak transcription	Spleen	Spleen
8	chr19:36195400-36206600	Weak transcription	Gastric	stomach
9	chr19:36195800-36201600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr19:36197800-36200400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr19:36198000-36199200	Weak transcription	Esophagus	oesophagus
12	chr19:36198000-36205400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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