Variant report

Variant	rs73599301
Chromosome Location	chr16:81149182-81149183
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81149124..81150808-chr16:81152583..81155563,2	MCF-7	breast:

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10400998	1.00[ASN][1000 genomes]
rs10468366	1.00[ASN][1000 genomes]
rs13332317	1.00[ASN][1000 genomes]
rs13332530	1.00[ASN][1000 genomes]
rs16954525	0.92[ASN][1000 genomes]
rs16954528	1.00[ASN][1000 genomes]
rs16954688	1.00[ASN][1000 genomes]
rs1869347	1.00[ASN][1000 genomes]
rs2549901	1.00[ASN][1000 genomes]
rs28469459	1.00[ASN][1000 genomes]
rs28472979	1.00[ASN][1000 genomes]
rs28586999	1.00[ASN][1000 genomes]
rs28709530	1.00[ASN][1000 genomes]
rs4889239	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55648346	1.00[ASN][1000 genomes]
rs55664147	0.84[ASN][1000 genomes]
rs55894951	1.00[ASN][1000 genomes]
rs56117555	1.00[ASN][1000 genomes]
rs56333013	0.84[ASN][1000 genomes]
rs56378007	1.00[ASN][1000 genomes]
rs56758545	0.84[ASN][1000 genomes]
rs56838270	0.84[ASN][1000 genomes]
rs57435835	0.92[ASN][1000 genomes]
rs57687812	1.00[ASN][1000 genomes]
rs57830624	0.84[ASN][1000 genomes]
rs57906343	1.00[ASN][1000 genomes]
rs58418167	1.00[ASN][1000 genomes]
rs60573779	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61435632	1.00[ASN][1000 genomes]
rs61438195	1.00[ASN][1000 genomes]
rs61495305	1.00[ASN][1000 genomes]
rs6564815	0.84[ASN][1000 genomes]
rs6564816	0.84[ASN][1000 genomes]
rs7187063	0.84[ASN][1000 genomes]
rs7194808	1.00[ASN][1000 genomes]
rs7195463	1.00[ASN][1000 genomes]
rs7197019	1.00[ASN][1000 genomes]
rs7198494	0.92[ASN][1000 genomes]
rs72827277	1.00[ASN][1000 genomes]
rs73597275	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74028898	0.84[ASN][1000 genomes]
rs74028901	0.84[ASN][1000 genomes]
rs74028902	0.92[ASN][1000 genomes]
rs74030503	0.92[ASN][1000 genomes]
rs74030505	1.00[ASN][1000 genomes]
rs8045625	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8061024	1.00[ASN][1000 genomes]
rs8061203	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8062432	1.00[ASN][1000 genomes]
rs8177847	1.00[ASN][1000 genomes]
rs8177854	1.00[ASN][1000 genomes]
rs8177857	1.00[ASN][1000 genomes]
rs8177858	1.00[ASN][1000 genomes]
rs8177859	1.00[ASN][1000 genomes]
rs8177860	1.00[ASN][1000 genomes]
rs8177868	1.00[ASN][1000 genomes]
rs8177869	1.00[ASN][1000 genomes]
rs8177870	1.00[ASN][1000 genomes]
rs8177871	1.00[ASN][1000 genomes]
rs8177872	1.00[ASN][1000 genomes]
rs8177873	1.00[ASN][1000 genomes]
rs8177874	1.00[ASN][1000 genomes]
rs8177877	1.00[ASN][1000 genomes]
rs8177879	1.00[ASN][1000 genomes]
rs8177881	1.00[ASN][1000 genomes]
rs8177890	1.00[ASN][1000 genomes]
rs8177893	1.00[ASN][1000 genomes]
rs8177895	1.00[ASN][1000 genomes]
rs8177905	1.00[ASN][1000 genomes]
rs8177907	1.00[ASN][1000 genomes]
rs8177908	1.00[ASN][1000 genomes]
rs8177910	1.00[ASN][1000 genomes]
rs8177913	1.00[ASN][1000 genomes]
rs8177914	1.00[ASN][1000 genomes]
rs8177915	1.00[ASN][1000 genomes]
rs8177917	1.00[ASN][1000 genomes]
rs8177922	1.00[ASN][1000 genomes]
rs8177924	1.00[ASN][1000 genomes]
rs8177926	1.00[ASN][1000 genomes]
rs8177927	1.00[ASN][1000 genomes]
rs8177928	1.00[ASN][1000 genomes]
rs8177929	1.00[ASN][1000 genomes]
rs8177930	0.92[ASN][1000 genomes]
rs8177932	1.00[ASN][1000 genomes]
rs8177933	1.00[ASN][1000 genomes]
rs8177934	1.00[ASN][1000 genomes]
rs8177935	1.00[ASN][1000 genomes]
rs8177936	1.00[ASN][1000 genomes]
rs8177937	1.00[ASN][1000 genomes]
rs8177941	1.00[ASN][1000 genomes]
rs8177949	1.00[ASN][1000 genomes]
rs9932197	1.00[ASN][1000 genomes]
rs9934205	0.85[ASN][1000 genomes]
rs9934220	1.00[ASN][1000 genomes]
rs9935938	1.00[ASN][1000 genomes]
rs9937014	1.00[ASN][1000 genomes]
rs9937594	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948534	chr16:80867635-81160492	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv532597	chr16:81009718-81388348	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv427984	chr16:81026691-81320341	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	esv2422360	chr16:81066033-81180727	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	esv2751615	chr16:81093099-81307599	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv530715	chr16:81117168-81252875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv907005	chr16:81121353-81194912	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1067144	chr16:81129298-81181641	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv1059006	chr16:81139073-81155094	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1063460	chr16:81139073-81157385	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv520035	chr16:81145675-81157521	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81130000-81187600	Weak transcription	Right Atrium	heart
2	chr16:81141200-81156600	Weak transcription	Brain Angular Gyrus	brain
3	chr16:81141200-81169600	Weak transcription	Brain Anterior Caudate	brain
4	chr16:81141400-81150800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr16:81141400-81153800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr16:81141400-81169600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr16:81141400-81169600	Weak transcription	Brain Hippocampus Middle	brain
8	chr16:81147800-81156800	Weak transcription	Adipose Nuclei	Adipose
9	chr16:81149000-81149400	Enhancers	Fetal Heart	heart

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