Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150847959..150850613-chr6:150920501..150922911,2	K562	blood:
2	chr6:150846296..150849812-chr6:150852359..150857324,4	K562	blood:

Variant related genes	Relation type
ENSG00000232891	Chromatin interaction
ENSG00000120278	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs4133114	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56115385	1.00[EUR][1000 genomes]
rs56240015	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57832891	1.00[EUR][1000 genomes]
rs57941088	1.00[EUR][1000 genomes]
rs58095059	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58578147	1.00[EUR][1000 genomes]
rs59258256	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59672491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60016940	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73605181	1.00[EUR][1000 genomes]
rs73606254	1.00[EUR][1000 genomes]
rs73606255	1.00[EUR][1000 genomes]
rs73607031	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73607069	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73607070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73780022	1.00[EUR][1000 genomes]
rs73780023	1.00[EUR][1000 genomes]
rs73780024	1.00[EUR][1000 genomes]
rs73780025	1.00[EUR][1000 genomes]
rs73780026	1.00[EUR][1000 genomes]
rs73780027	1.00[EUR][1000 genomes]
rs73782675	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv464079	chr6:150836676-150873766	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv604850	chr6:150836676-150873766	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150847200-150850000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:150847600-150849800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:150847800-150850800	Enhancers	Colon Smooth Muscle	Colon
4	chr6:150848200-150850600	Enhancers	Stomach Smooth Muscle	stomach
5	chr6:150848600-150850600	Enhancers	Rectal Smooth Muscle	rectum
6	chr6:150848600-150851000	Enhancers	Placenta	Placenta
7	chr6:150848800-150849800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:150849000-150849800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:150849000-150850400	Enhancers	Primary B cells from cord blood	blood
10	chr6:150849400-150849800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:150849400-150850200	Enhancers	Fetal Muscle Leg	muscle
12	chr6:150849400-150850200	Enhancers	Fetal Thymus	thymus
13	chr6:150849400-150850400	Enhancers	Primary B cells from peripheral blood	blood
14	chr6:150849400-150850600	Enhancers	Fetal Stomach	stomach

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