Variant report

Variant	rs73610305
Chromosome Location	chr10:25836762-25836763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10159703	1.00[EUR][1000 genomes]
rs10828809	1.00[EUR][1000 genomes]
rs12249673	1.00[EUR][1000 genomes]
rs12259717	1.00[EUR][1000 genomes]
rs12267402	1.00[EUR][1000 genomes]
rs59780253	1.00[EUR][1000 genomes]
rs7085469	1.00[EUR][1000 genomes]
rs73608302	1.00[EUR][1000 genomes]
rs73610306	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73610309	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25820000-25836800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:25834600-25839200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr10:25835800-25836800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr10:25836000-25836800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr10:25836000-25836800	Active TSS	Brain Anterior Caudate	brain
6	chr10:25836000-25837000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr10:25836200-25836800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr10:25836200-25836800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr10:25836200-25836800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr10:25836200-25837000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr10:25836400-25836800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:25836400-25836800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr10:25836400-25836800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:25836600-25836800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:25836600-25836800	Enhancers	NH-A	brain
16	chr10:25836600-25837000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:25836600-25837000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:25836600-25837000	Enhancers	HUVEC	blood vessel
19	chr10:25836600-25841200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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