Variant report

Variant	rs73615828
Chromosome Location	chr6:150672427-150672428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs58245853	1.00[AMR][1000 genomes]
rs58537139	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60342957	1.00[AMR][1000 genomes]
rs6932274	1.00[AMR][1000 genomes]
rs73615806	1.00[AMR][1000 genomes]
rs73615807	1.00[AMR][1000 genomes]
rs73615809	1.00[AMR][1000 genomes]
rs73615812	1.00[AMR][1000 genomes]
rs73615816	1.00[AMR][1000 genomes]
rs73615831	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150667800-150673000	Weak transcription	NH-A	brain
2	chr6:150668400-150673000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:150668400-150673600	Weak transcription	HMEC	breast
4	chr6:150668400-150673600	Weak transcription	NHEK	skin
5	chr6:150670000-150673200	Weak transcription	NHDF-Ad	bronchial
6	chr6:150672200-150674400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:150672400-150674000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:150672400-150674600	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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