Variant report

Variant	rs73619627
Chromosome Location	chr6:150922417-150922418
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150914794..150917748-chr6:150922118..150924160,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17079757	1.00[AMR][1000 genomes]
rs17079779	1.00[AMR][1000 genomes]
rs56948265	1.00[AMR][1000 genomes]
rs57385185	0.84[AFR][1000 genomes]
rs58842154	0.84[AFR][1000 genomes]
rs59573747	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60969274	0.93[AFR][1000 genomes]
rs61081754	0.84[AFR][1000 genomes]
rs6902794	0.84[AFR][1000 genomes]
rs73619628	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73619632	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73619646	0.84[AFR][1000 genomes]
rs73619648	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3415576	chr6:150920109-150923107	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150920200-150922600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
2	chr6:150920400-150922600	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr6:150920400-150923000	Active TSS	Right Atrium	heart
4	chr6:150920400-150923200	Active TSS	Thymus	Thymus
5	chr6:150920600-150922600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
6	chr6:150920600-150922600	Active TSS	Right Ventricle	heart
7	chr6:150920800-150922600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr6:150920800-150922600	Active TSS	Fetal Brain Female	brain
9	chr6:150920800-150922600	Bivalent/Poised TSS	Fetal Stomach	stomach
10	chr6:150920800-150922800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:150921000-150923000	Active TSS	Lung	lung
12	chr6:150921400-150922600	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr6:150921400-150922600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
14	chr6:150921800-150922600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
15	chr6:150921800-150922600	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
16	chr6:150921800-150922800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
17	chr6:150922000-150922600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
18	chr6:150922000-150922600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
19	chr6:150922200-150922600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:150922200-150922600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
21	chr6:150922200-150922600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
22	chr6:150922200-150922600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:150922200-150922600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:150922200-150922600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:150922200-150922600	Flanking Active TSS	Fetal Heart	heart
26	chr6:150922200-150922600	Bivalent/Poised TSS	Psoas Muscle	Psoas
27	chr6:150922200-150922600	Flanking Active TSS	HMEC	breast
28	chr6:150922200-150922800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:150922200-150922800	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
30	chr6:150922200-150922800	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr6:150922200-150923000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:150922200-150923000	Flanking Active TSS	Duodenum Mucosa	Duodenum
33	chr6:150922200-150927600	Weak transcription	Spleen	Spleen
34	chr6:150922200-150930600	Weak transcription	Aorta	Aorta
35	chr6:150922400-150922600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
36	chr6:150922400-150922600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:150922400-150922600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
38	chr6:150922400-150922600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:150922400-150922600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr6:150922400-150922600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
41	chr6:150922400-150922600	Enhancers	Primary hematopoietic stem cells	blood
42	chr6:150922400-150922600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
43	chr6:150922400-150922600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr6:150922400-150922600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
45	chr6:150922400-150922600	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
46	chr6:150922400-150922600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:150922400-150922600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
48	chr6:150922400-150922600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:150922400-150922600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:150922400-150922600	Enhancers	Liver	Liver

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