Variant report

Variant	rs736374
Chromosome Location	chr11:35266944-35266945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1043101	1.00[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10742339	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10742340	0.81[EUR][1000 genomes]
rs10742341	0.81[EUR][1000 genomes]
rs10768118	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10768120	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10768121	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10768122	1.00[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10768123	0.83[EUR][1000 genomes]
rs10768126	0.81[EUR][1000 genomes]
rs10836356	0.99[ASN][1000 genomes]
rs10836360	0.82[EUR][1000 genomes]
rs10836361	0.83[EUR][1000 genomes]
rs10836362	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10836363	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10836364	0.81[CHD][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10836367	0.81[EUR][1000 genomes]
rs10836369	0.80[EUR][1000 genomes]
rs11033045	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11033046	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11033048	1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11524863	0.80[EUR][1000 genomes]
rs12361171	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12796856	0.82[EUR][1000 genomes]
rs1570214	0.84[CHD][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes]
rs1570215	0.83[EUR][1000 genomes]
rs17378105	0.84[CHD][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3088168	1.00[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35629461	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763888	0.82[CHD][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs3794086	0.82[MEX][hapmap];0.83[TSI][hapmap]
rs3794089	0.83[MEX][hapmap];0.84[TSI][hapmap]
rs3794091	0.81[EUR][1000 genomes]
rs3794098	0.84[CHD][hapmap];0.85[GIH][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs3794099	0.84[CHD][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs3794100	0.84[CHD][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs3794101	0.83[EUR][1000 genomes]
rs3794102	0.86[CHD][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3794103	0.83[EUR][1000 genomes]
rs4755394	0.84[EUR][1000 genomes]
rs4755395	0.81[EUR][1000 genomes]
rs4756203	0.84[EUR][1000 genomes]
rs4756204	0.84[CHD][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4756205	0.83[EUR][1000 genomes]
rs4756206	0.83[EUR][1000 genomes]
rs6484778	0.81[EUR][1000 genomes]
rs7105505	0.83[EUR][1000 genomes]
rs7105690	0.84[CHD][hapmap];0.85[GIH][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs7121587	0.83[EUR][1000 genomes]
rs7946149	0.81[EUR][1000 genomes]
rs932633	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs932635	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9633870	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs736374	HIPK3	cis	cerebellum	SCAN

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35258400-35267400	Weak transcription	Aorta	Aorta
2	chr11:35258400-35269000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:35258800-35267400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:35259200-35270200	Weak transcription	Stomach Mucosa	stomach
5	chr11:35260800-35270200	Weak transcription	Fetal Lung	lung
6	chr11:35262600-35269800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:35262600-35270600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr11:35263000-35270000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr11:35263000-35270000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr11:35263000-35270200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr11:35263000-35270200	Weak transcription	Fetal Brain Male	brain
12	chr11:35263400-35270600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:35263600-35270000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr11:35264000-35267200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:35264400-35267400	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:35264400-35268200	Weak transcription	NHLF	lung
17	chr11:35264400-35281800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:35264600-35267000	Weak transcription	NHDF-Ad	bronchial
19	chr11:35264600-35267800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:35264600-35268000	Weak transcription	HSMMtube	muscle
21	chr11:35264600-35268400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:35264800-35268200	Weak transcription	Osteobl	bone
23	chr11:35264800-35270000	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr11:35264800-35270200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:35264800-35281800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr11:35265000-35267600	Weak transcription	HSMM	muscle
27	chr11:35265400-35267600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr11:35265400-35270200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:35265800-35270200	Weak transcription	Pancreas	Pancrea
30	chr11:35265800-35305800	Weak transcription	HepG2	liver
31	chr11:35266000-35269600	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr11:35266400-35267400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:35266400-35267600	Weak transcription	Primary T cells from cord blood	blood
34	chr11:35266600-35268000	Enhancers	Fetal Heart	heart
35	chr11:35266600-35269200	Enhancers	Fetal Stomach	stomach
36	chr11:35266800-35267800	Enhancers	Stomach Smooth Muscle	stomach
37	chr11:35266800-35269000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:35266800-35269800	Enhancers	Primary T cells fromperipheralblood	blood
39	chr11:35266800-35269800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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