Variant report

Variant	rs73639351
Chromosome Location	chr9:6703980-6703981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:198)
CpG islands
(count:61)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:198 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr9:6703807-6704465	A549	lung:	n/a	n/a
2	POLR2A	chr9:6703903-6704279	H1-hESC	embryonic stem cell:	n/a	n/a
3	CHD1	chr9:6703329-6704312	GM12878	blood:	n/a	n/a
4	TCF12	chr9:6703882-6704401	A549	lung:	n/a	chr9:6704183-6704190
5	STAT5A	chr9:6703816-6704689	GM12878	blood:	n/a	n/a
6	SPI1	chr9:6703916-6704242	GM12891	blood:	n/a	chr9:6704069-6704078 chr9:6704068-6704081 chr9:6704067-6704080 chr9:6704068-6704081
7	TAF1	chr9:6703943-6704630	H1-hESC	embryonic stem cell:	n/a	n/a
8	ATF3	chr9:6703937-6704598	GM12878	blood:	n/a	chr9:6703954-6703967 chr9:6704101-6704111
9	TBP	chr9:6703749-6704632	GM12878	blood:	n/a	n/a
10	POLR2A	chr9:6702970-6704788	PBDE	blood:	n/a	n/a
11	MAX	chr9:6703499-6704737	ECC-1	luminal epithelium:	n/a	n/a
12	USF1	chr9:6703723-6704903	SK-N-SH	brain:	n/a	chr9:6704242-6704253 chr9:6704261-6704272
13	USF1	chr9:6703890-6704484	SK-N-SH_RA	brain:	n/a	chr9:6704242-6704253 chr9:6704261-6704272
14	TCF3	chr9:6703945-6704191	GM12878	blood:	n/a	n/a
15	POLR2A	chr9:6703463-6704608	GM12878	blood:	n/a	n/a
16	RELA	chr9:6703455-6704574	GM19099	blood:	n/a	n/a
17	EP300	chr9:6703972-6704544	A549	lung:	n/a	chr9:6704065-6704079
18	SPI1	chr9:6703777-6704455	HL-60	blood:	n/a	chr9:6704069-6704078 chr9:6704068-6704081 chr9:6704067-6704080 chr9:6704068-6704081
19	PBX3	chr9:6703905-6704626	A549	lung:	n/a	chr9:6704333-6704342
20	POLR2A	chr9:6703516-6704610	HL-60	blood:	n/a	n/a
21	BCLAF1	chr9:6703931-6704678	GM12878	blood:	n/a	n/a
22	POLR2A	chr9:6703500-6704641	GM19099	blood:	n/a	n/a
23	SIN3AK20	chr9:6703932-6704504	A549	lung:	n/a	n/a
24	E2F6	chr9:6703446-6704991	H1-hESC	embryonic stem cell:	n/a	chr9:6704861-6704868 chr9:6704314-6704323
25	MAX	chr9:6703899-6704802	SK-N-SH	brain:	n/a	n/a
26	TAF1	chr9:6703906-6704676	H1-neurons	neurons:	n/a	n/a
27	RUNX3	chr9:6703564-6704729	GM12878	blood:	n/a	n/a
28	POLR2A	chr9:6703350-6704635	GM12892	blood:	n/a	n/a
29	CTCF	chr9:6703980-6704130	SK-N-SH_RA	brain:	n/a	chr9:6704024-6704032
30	POLR2A	chr9:6703890-6704516	GM12892	blood:	n/a	n/a
31	POLR2A	chr9:6703923-6704509	MCF10A-Er-Src	breast:	n/a	n/a
32	EP300	chr9:6703752-6704621	ECC-1	luminal epithelium:	n/a	chr9:6704065-6704079
33	MAX	chr9:6703893-6704730	HepG2	liver:	n/a	n/a
34	POLR2A	chr9:6703540-6704679	GM12878	blood:	n/a	n/a
35	POLR2A	chr9:6702928-6704618	GM12878	blood:	n/a	n/a
36	POLR2A	chr9:6703868-6704526	GM12878	blood:	n/a	n/a
37	GATA3	chr9:6703877-6704563	A549	lung:	n/a	n/a
38	MXI1	chr9:6702843-6704921	SK-N-SH	brain:	n/a	n/a
39	SIN3AK20	chr9:6703973-6704445	A549	lung:	n/a	n/a
40	POLR2A	chr9:6703931-6704590	SK-N-SH	brain:	n/a	n/a
41	USF1	chr9:6703862-6704650	ECC-1	luminal epithelium:	n/a	chr9:6704242-6704253 chr9:6704261-6704272
42	POLR2A	chr9:6703842-6704624	A549	lung:	n/a	n/a
43	SP4	chr9:6703871-6704728	H1-hESC	embryonic stem cell:	n/a	n/a
44	MAX	chr9:6703648-6704794	SK-N-SH	brain:	n/a	n/a
45	YY1	chr9:6703468-6704674	GM12878	blood:	n/a	n/a
46	MTA3	chr9:6703146-6704940	GM12878	blood:	n/a	n/a
47	POLR2A	chr9:6703550-6704612	GM15510	blood:	n/a	n/a
48	USF2	chr9:6703882-6704534	GM12878	blood:	n/a	n/a
49	NFIC	chr9:6703548-6704833	GM12878	blood:	n/a	n/a
50	SPI1	chr9:6703903-6704191	GM12878	blood:	n/a	chr9:6704069-6704078 chr9:6704068-6704081 chr9:6704067-6704080 chr9:6704068-6704081

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:6703949-6703999	GM19239	blood:	n/a
2	chr9:6703949-6703999	AG04449	skin:	fetal
3	chr9:6703949-6703999	HPAEpiC	pulmonary alveolar:	n/a
4	chr9:6703949-6703999	AoSMC	blood vessel:	n/a
5	chr9:6703949-6703999	GM12878	blood:	n/a
6	chr9:6703949-6703999	HepG2	liver:	n/a
7	chr9:6703949-6703999	ovcar-3	ovarian:	n/a
8	chr9:6703949-6703999	SAEC	small airway:	n/a
9	chr9:6703949-6703999	IMR90	lung:	fetal
10	chr9:6703949-6703999	HIPEpiC	eye:	n/a
11	chr9:6703949-6703999	LNCaP	prostate:	n/a
12	chr9:6703949-6703999	HUVEC	blood vessel:	n/a
13	chr9:6703949-6703999	Jurkat	blood:	n/a
14	chr9:6703949-6703999	ProgFib	skin:	n/a
15	chr9:6703949-6703999	HCM	heart:	n/a
16	chr9:6703949-6703999	GM12891	blood:	n/a
17	chr9:6703949-6703999	HCT-116	colon:	n/a
18	chr9:6703949-6703999	CMK	blood:	n/a
19	chr9:6703949-6703999	NB4	blood:	n/a
20	chr9:6703949-6703999	GM12892	blood:	n/a
21	chr9:6703949-6703999	PrEC	prostate:	n/a
22	chr9:6703949-6703999	SK-N-MC	brain:	n/a
23	chr9:6703949-6703999	HCF	heart:	n/a
24	chr9:6703949-6703999	AG04450	lung:	fetal
25	chr9:6703949-6703999	SK-N-SH_RA	brain:	n/a
26	chr9:6703949-6703999	Hepatocyte	liver:	n/a
27	chr9:6703949-6703999	HL-60	blood:	n/a
28	chr9:6703949-6703999	T-47D	breast:	n/a
29	chr9:6703949-6703999	A549	lung:	n/a
30	chr9:6703949-6703999	HRCEpiC	kidney:	n/a
31	chr9:6703949-6703999	HCPEpiC	choroid plexus:	n/a
32	chr9:6703949-6703999	HRE	kidney:	n/a
33	chr9:6703949-6703999	HAEpiC	amniotic membrane:	n/a
34	chr9:6703949-6703999	MCF10A-Er-Src	breast:	n/a
35	chr9:6703949-6703999	PFSK-1	brain:	n/a
36	chr9:6703949-6703999	MCF-7	breast:	n/a
37	chr9:6703949-6703999	NHDF-neo	bronchial:	n/a
38	chr9:6703949-6703999	K562	blood:	n/a
39	chr9:6703949-6703999	SKMC	muscle:	n/a
40	chr9:6703949-6703999	NH-A	brain:	n/a
41	chr9:6703949-6703999	BJ	skin:	n/a
42	chr9:6703949-6703999	HRPEpiC	eye:	n/a
43	chr9:6703949-6703999	ECC-1	luminal epithelium:	n/a
44	chr9:6703949-6703999	U87	brain:	n/a
45	chr9:6703949-6703999	HNPCEpiC	eye:	n/a
46	chr9:6703949-6703999	H1-hESC	embryonic stem cell:	embryo
47	chr9:6703949-6703999	BE2_C	brain:	n/a
48	chr9:6703949-6703999	HEEpiC	esophagus:	n/a
49	chr9:6703949-6703999	GM06990	blood:	n/a
50	chr9:6703949-6703999	NHBE	bronchial:	n/a

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:6702847..6705575-chr9:6714326..6717882,7	MCF-7	breast:
2	chr9:6702391..6705446-chr9:6756717..6760058,5	MCF-7	breast:
3	chr5:166256227..166256733-chr9:6703705..6704305,2	MCF-7	breast:
4	chr9:6683289..6684884-chr9:6702645..6704262,2	MCF-7	breast:
5	chr9:6690617..6692723-chr9:6701607..6704265,2	MCF-7	breast:
6	chr5:166255725..166256712-chr9:6703618..6704233,2	MCF-7	breast:
7	chr9:6698340..6700152-chr9:6701946..6704339,2	MCF-7	breast:
8	chr9:6702551..6705246-chr9:6715022..6717677,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000229611	TF binding region
ENSG00000229611	CpG island
ENSG00000225489	Chromatin interaction
ENSG00000107077	Chromatin interaction

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs55880960	1.00[AMR][1000 genomes]
rs56285401	1.00[AMR][1000 genomes]
rs56723871	1.00[AMR][1000 genomes]
rs57034661	1.00[AMR][1000 genomes]
rs57071745	1.00[AMR][1000 genomes]
rs57144536	1.00[AMR][1000 genomes]
rs58925857	1.00[AMR][1000 genomes]
rs59156305	1.00[AMR][1000 genomes]
rs59248125	1.00[AMR][1000 genomes]
rs59833876	1.00[AMR][1000 genomes]
rs60609261	1.00[AMR][1000 genomes]
rs60685946	1.00[AMR][1000 genomes]
rs7031699	1.00[AMR][1000 genomes]
rs73639348	1.00[AMR][1000 genomes]
rs73639349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73639350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73639353	1.00[AMR][1000 genomes]
rs73639360	1.00[AMR][1000 genomes]
rs7859329	1.00[AMR][1000 genomes]
rs7872677	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:101 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892162	chr9:6480005-6788085	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv2752308	chr9:6523060-6899149	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
3	esv3324686	chr9:6528411-6728310	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
4	nsv1028402	chr9:6542253-6874231	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
5	nsv1018308	chr9:6544766-6869653	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
6	nsv1015462	chr9:6544766-6874231	Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
7	nsv1018870	chr9:6548393-6708345	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
8	nsv870402	chr9:6565246-7016784	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
9	nsv1033539	chr9:6566610-7022554	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
10	nsv466111	chr9:6567841-7017391	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
11	nsv613208	chr9:6567841-7017391	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
12	nsv1029929	chr9:6573752-6852349	Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
13	nsv539969	chr9:6573752-6852349	Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
14	nsv1024831	chr9:6573752-7018641	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
15	nsv1034936	chr9:6575976-6708345	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
16	esv2758626	chr9:6576991-6838660	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
17	esv2759661	chr9:6576991-6845561	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
18	nsv1031417	chr9:6584138-6823129	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
19	nsv539970	chr9:6584138-6823129	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
20	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
21	nsv1018415	chr9:6605417-6723788	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
22	nsv1021933	chr9:6605417-6824468	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
23	nsv1018845	chr9:6609578-6829592	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
24	nsv1023706	chr9:6619819-6745551	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
25	nsv519777	chr9:6620059-6750556	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
26	nsv613209	chr9:6620059-6750556	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
27	nsv1021304	chr9:6630626-6767080	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
28	nsv1033323	chr9:6630626-6824468	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
29	nsv613210	chr9:6635045-6750556	Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
30	nsv892168	chr9:6641895-6703997	Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
31	nsv892169	chr9:6641895-6715730	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
32	nsv892170	chr9:6641895-6723861	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
33	nsv892171	chr9:6648607-6703997	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
34	nsv1028863	chr9:6656619-6725007	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
35	nsv1034003	chr9:6663786-6745551	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
36	nsv613211	chr9:6664282-6706693	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
37	nsv1030278	chr9:6669375-6741529	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
38	nsv892173	chr9:6669474-6760919	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
39	nsv466112	chr9:6669474-6786734	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
40	nsv613212	chr9:6669474-6786734	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
41	esv2752309	chr9:6670448-6908200	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
42	nsv466113	chr9:6672097-6731786	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
43	nsv613213	chr9:6672097-6731786	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
44	nsv892175	chr9:6672097-6750556	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
45	nsv892176	chr9:6672097-6760919	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
46	nsv982630	chr9:6672217-6796787	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
47	nsv471273	chr9:6673465-6739489	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
48	nsv892177	chr9:6673465-6750556	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
49	nsv892178	chr9:6673957-6750556	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
50	nsv892179	chr9:6676953-6733456	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6703000-6704600	Active TSS	Primary T killer memory cells from peripheral blood	blood
2	chr9:6703000-6704600	Active TSS	Placenta Amnion	Placenta Amnion
3	chr9:6703200-6704200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:6703200-6704400	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr9:6703200-6704400	Active TSS	Duodenum Mucosa	Duodenum
6	chr9:6703200-6704400	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr9:6703200-6704600	Flanking Active TSS	Primary hematopoietic stem cells	blood
8	chr9:6703200-6704600	Active TSS	Primary T helper naive cells from peripheral blood	blood
9	chr9:6703200-6704600	Active TSS	Liver	Liver
10	chr9:6703200-6704600	Active TSS	Colon Smooth Muscle	Colon
11	chr9:6703200-6704800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr9:6703200-6704800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:6703200-6704800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:6703200-6704800	Active TSS	Colonic Mucosa	Colon
15	chr9:6703200-6705000	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr9:6703200-6705000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr9:6703400-6704000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr9:6703400-6704000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:6703400-6704000	Flanking Active TSS	Fetal Thymus	thymus
20	chr9:6703400-6704400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr9:6703400-6704400	Active TSS	Fetal Intestine Small	intestine
22	chr9:6703400-6704400	Active TSS	Right Ventricle	heart
23	chr9:6703400-6704600	Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr9:6703400-6704600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:6703400-6704600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:6703400-6704600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
27	chr9:6703400-6704600	Active TSS	Brain Cingulate Gyrus	brain
28	chr9:6703400-6704600	Active TSS	Brain Substantia Nigra	brain
29	chr9:6703400-6704600	Active TSS	Esophagus	oesophagus
30	chr9:6703400-6704600	Active TSS	Fetal Intestine Large	intestine
31	chr9:6703400-6704600	Bivalent/Poised TSS	Fetal Stomach	stomach
32	chr9:6703400-6704600	Active TSS	Rectal Smooth Muscle	rectum
33	chr9:6703400-6704600	Active TSS	Small Intestine	intestine
34	chr9:6703400-6704600	Active TSS	NH-A	brain
35	chr9:6703400-6704800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:6703400-6704800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr9:6703400-6704800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr9:6703400-6704800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr9:6703400-6704800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr9:6703400-6704800	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr9:6703400-6704800	Active TSS	Brain Hippocampus Middle	brain
42	chr9:6703400-6704800	Active TSS	Duodenum Smooth Muscle	Duodenum
43	chr9:6703400-6704800	Active TSS	Fetal Kidney	kidney
44	chr9:6703400-6704800	Active TSS	Fetal Lung	lung
45	chr9:6703400-6704800	Active TSS	NHDF-Ad	bronchial
46	chr9:6703400-6704800	Active TSS	Osteobl	bone
47	chr9:6703400-6705000	Active TSS	H9 Cell Line	embryonic stem cell
48	chr9:6703400-6705000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr9:6703400-6705000	Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr9:6703400-6705000	Active TSS	HUES64 Cell Line	embryonic stem cell

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