Variant report

Variant	rs73642203
Chromosome Location	chr9:17741672-17741673
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55792543	1.00[AMR][1000 genomes]
rs55880611	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58255328	1.00[AMR][1000 genomes]
rs60626906	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61166306	1.00[AMR][1000 genomes]
rs73642205	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73642206	0.86[AFR][1000 genomes]
rs73642209	1.00[AMR][1000 genomes]
rs73642210	1.00[AMR][1000 genomes]
rs73642309	1.00[AMR][1000 genomes]
rs73642311	1.00[AMR][1000 genomes]
rs73642312	1.00[AMR][1000 genomes]
rs73642313	1.00[AMR][1000 genomes]
rs73645328	1.00[AMR][1000 genomes]
rs73645329	1.00[AMR][1000 genomes]
rs73645331	1.00[AMR][1000 genomes]
rs73645332	1.00[AMR][1000 genomes]
rs73645333	1.00[AMR][1000 genomes]
rs7852328	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892675	chr9:17694823-17790526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1033892	chr9:17734224-17757581	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
6	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17739200-17741800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:17741200-17742400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr9:17741600-17742200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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