Variant report

Variant	rs73642315
Chromosome Location	chr9:17772332-17772333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10963295	0.81[ASN][1000 genomes]
rs10963299	0.81[ASN][1000 genomes]
rs12380227	0.90[ASN][1000 genomes]
rs16923365	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16935984	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2891113	0.90[ASN][1000 genomes]
rs35911294	0.95[ASN][1000 genomes]
rs3808674	0.90[ASN][1000 genomes]
rs4284123	0.90[ASN][1000 genomes]
rs4382571	0.90[ASN][1000 genomes]
rs4415416	0.81[ASN][1000 genomes]
rs4430174	0.90[ASN][1000 genomes]
rs4477127	0.90[ASN][1000 genomes]
rs4481712	0.90[ASN][1000 genomes]
rs4531142	0.90[ASN][1000 genomes]
rs4629969	0.90[ASN][1000 genomes]
rs4642745	0.81[ASN][1000 genomes]
rs4961448	0.90[ASN][1000 genomes]
rs61551917	0.85[ASN][1000 genomes]
rs6475179	0.81[ASN][1000 genomes]
rs6475180	0.81[ASN][1000 genomes]
rs7027918	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73645334	0.90[ASN][1000 genomes]
rs73645339	0.90[ASN][1000 genomes]
rs7847592	0.81[ASN][1000 genomes]
rs7867642	0.81[ASN][1000 genomes]
rs7871893	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7873468	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892675	chr9:17694823-17790526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1023089	chr9:17748811-17919574	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17754800-17772600	Weak transcription	Hela-S3	cervix
2	chr9:17764600-17782800	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links