Variant report

Variant	rs73642488
Chromosome Location	chr9:14994537-14994538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55690915	1.00[AMR][1000 genomes]
rs57954003	1.00[AMR][1000 genomes]
rs58304447	0.83[AFR][1000 genomes]
rs59461104	1.00[AMR][1000 genomes]
rs60047223	1.00[AMR][1000 genomes]
rs73419726	1.00[AMR][1000 genomes]
rs73419728	1.00[AMR][1000 genomes]
rs73419735	1.00[AMR][1000 genomes]
rs73642466	0.91[AFR][1000 genomes]
rs73642484	1.00[AMR][1000 genomes]
rs73642486	1.00[AMR][1000 genomes]
rs73642489	1.00[AMR][1000 genomes]
rs73642494	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv613647	chr9:14852141-15016475	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv892620	chr9:14922877-15086021	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv892621	chr9:14928013-15043692	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2761503	chr9:14960217-15049343	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv892622	chr9:14960217-15055607	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14992200-14994800	Active TSS	Psoas Muscle	Psoas
2	chr9:14992200-14995000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:14992400-14995000	Flanking Active TSS	Dnd41	blood
4	chr9:14993000-14994600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:14993000-14994800	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr9:14993000-14994800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:14993200-14994600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr9:14993400-14994600	Flanking Active TSS	HUVEC	blood vessel
9	chr9:14993600-14994600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
10	chr9:14993800-14994600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr9:14993800-14994600	Enhancers	Placenta	Placenta
12	chr9:14993800-14994800	Flanking Active TSS	Primary T cells from cord blood	blood
13	chr9:14993800-14994800	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr9:14993800-15002400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:14994000-14994600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:14994000-14994600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:14994000-14994600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
18	chr9:14994000-14994600	Enhancers	Fetal Stomach	stomach
19	chr9:14994000-14994800	Enhancers	HSMMtube	muscle
20	chr9:14994000-14995000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:14994000-14995000	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr9:14994000-14995000	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr9:14994200-14994600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr9:14994200-14994600	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr9:14994200-14994600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:14994200-14994600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr9:14994200-14994600	Enhancers	Colon Smooth Muscle	Colon
28	chr9:14994200-14994600	Bivalent Enhancer	Fetal Brain Female	brain
29	chr9:14994200-14994600	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr9:14994200-14994600	Enhancers	Spleen	Spleen
31	chr9:14994200-14994800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
32	chr9:14994200-14994800	Enhancers	Primary T cells fromperipheralblood	blood
33	chr9:14994200-14994800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr9:14994200-14994800	Enhancers	Duodenum Mucosa	Duodenum
35	chr9:14994200-14994800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr9:14994200-14994800	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr9:14994200-14995000	Enhancers	Fetal Thymus	thymus
38	chr9:14994200-14995000	Enhancers	Thymus	Thymus
39	chr9:14994400-14994600	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr9:14994400-14994600	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr9:14994400-14994600	Enhancers	Fetal Kidney	kidney
42	chr9:14994400-14994600	Enhancers	Fetal Lung	lung
43	chr9:14994400-14994600	Enhancers	K562	blood
44	chr9:14994400-14994600	Enhancers	NHDF-Ad	bronchial
45	chr9:14994400-14994800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
46	chr9:14994400-14994800	Enhancers	Adipose Nuclei	Adipose
47	chr9:14994400-14994800	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr9:14994400-14995000	Enhancers	Primary hematopoietic stem cells	blood
49	chr9:14994400-14995000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr9:14994400-14995000	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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