Variant report

Variant	rs73642494
Chromosome Location	chr9:15016544-15016545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs34512082	1.00[AMR][1000 genomes]
rs55690915	1.00[AMR][1000 genomes]
rs57954003	1.00[AMR][1000 genomes]
rs59461104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60047223	1.00[AMR][1000 genomes]
rs7039092	1.00[AMR][1000 genomes]
rs7042519	1.00[AMR][1000 genomes]
rs73419726	1.00[AMR][1000 genomes]
rs73419728	1.00[AMR][1000 genomes]
rs73419735	1.00[AMR][1000 genomes]
rs73642484	1.00[AMR][1000 genomes]
rs73642486	1.00[AMR][1000 genomes]
rs73642488	1.00[AMR][1000 genomes]
rs73642489	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892620	chr9:14922877-15086021	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv892621	chr9:14928013-15043692	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2761503	chr9:14960217-15049343	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv892622	chr9:14960217-15055607	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14994400-15020000	Weak transcription	Brain Angular Gyrus	brain
2	chr9:14994800-15020000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:15003200-15020000	Weak transcription	Brain Anterior Caudate	brain
4	chr9:15009800-15018200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr9:15014000-15018000	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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