Variant report

Variant	rs73643140
Chromosome Location	chr9:27087361-27087362
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55921416	1.00[AMR][1000 genomes]
rs56154836	1.00[AMR][1000 genomes]
rs6475953	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7025174	1.00[AMR][1000 genomes]
rs7026226	1.00[AMR][1000 genomes]
rs73643113	1.00[AMR][1000 genomes]
rs73643118	1.00[AMR][1000 genomes]
rs73643121	1.00[AMR][1000 genomes]
rs73643123	1.00[AMR][1000 genomes]
rs73643124	1.00[AMR][1000 genomes]
rs73643126	1.00[AMR][1000 genomes]
rs73643127	1.00[AMR][1000 genomes]
rs73643129	1.00[AMR][1000 genomes]
rs73643130	1.00[AMR][1000 genomes]
rs73643134	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73643135	1.00[AMR][1000 genomes]
rs73643136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73643137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73643142	0.91[AFR][1000 genomes]
rs7856475	1.00[AMR][1000 genomes]
rs7857472	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv466334	chr9:27028947-27098940	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv613944	chr9:27028947-27098940	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27024800-27094800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:27068000-27087400	Weak transcription	Lung	lung
3	chr9:27079800-27087600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr9:27085200-27088000	Enhancers	Fetal Lung	lung
5	chr9:27085400-27088000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:27086600-27088000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:27086600-27091000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr9:27086800-27087400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:27086800-27087400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:27086800-27087400	Flanking Active TSS	Osteobl	bone
11	chr9:27086800-27087800	Enhancers	Fetal Heart	heart
12	chr9:27086800-27087800	Enhancers	Fetal Stomach	stomach
13	chr9:27086800-27087800	Enhancers	HSMMtube	muscle
14	chr9:27086800-27088000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:27086800-27088000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:27086800-27088000	Enhancers	Colon Smooth Muscle	Colon
17	chr9:27086800-27090600	Enhancers	HSMM	muscle
18	chr9:27087000-27087400	Weak transcription	Right Ventricle	heart
19	chr9:27087000-27087400	Flanking Active TSS	Hela-S3	cervix
20	chr9:27087000-27087400	Flanking Active TSS	NH-A	brain
21	chr9:27087000-27087800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:27087000-27087800	Enhancers	Ovary	ovary
23	chr9:27087000-27087800	Enhancers	Placenta Amnion	Placenta Amnion
24	chr9:27087000-27088800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:27087200-27087600	Active TSS	Stomach Smooth Muscle	stomach
26	chr9:27087200-27087800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:27087200-27087800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr9:27087200-27087800	Active TSS	NHLF	lung

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