Variant report

Variant	rs73645997
Chromosome Location	chr9:16582762-16582763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55881460	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73645992	1.00[AMR][1000 genomes]
rs73645998	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73646000	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16573200-16586400	Weak transcription	Pancreas	Pancrea
2	chr9:16573200-16591800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:16575800-16585800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:16576000-16586400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:16576000-16601600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:16576200-16583200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:16576400-16590800	Weak transcription	HSMM	muscle
8	chr9:16576400-16601400	Weak transcription	NHDF-Ad	bronchial
9	chr9:16576600-16584200	Weak transcription	HUVEC	blood vessel
10	chr9:16578000-16594200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:16578600-16585200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr9:16580000-16588200	Weak transcription	NH-A	brain
13	chr9:16580800-16583000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:16581000-16585000	Enhancers	Colon Smooth Muscle	Colon
15	chr9:16581600-16582800	Strong transcription	Fetal Muscle Leg	muscle
16	chr9:16581600-16586000	Enhancers	Rectal Smooth Muscle	rectum
17	chr9:16581800-16582800	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr9:16581800-16582800	Strong transcription	Osteobl	bone
19	chr9:16581800-16583000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:16581800-16583200	Enhancers	Fetal Stomach	stomach
21	chr9:16581800-16583400	Enhancers	Ovary	ovary
22	chr9:16582000-16582800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr9:16582000-16583000	Strong transcription	Muscle Satellite Cultured Cells	--
24	chr9:16582000-16583000	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr9:16582400-16582800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:16582400-16582800	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr9:16582400-16582800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:16582400-16582800	Genic enhancers	HSMMtube	muscle
29	chr9:16582400-16583000	Genic enhancers	NHLF	lung
30	chr9:16582400-16583200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:16582400-16583200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr9:16582400-16590800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr9:16582600-16582800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr9:16582600-16582800	Enhancers	Esophagus	oesophagus
35	chr9:16582600-16582800	Enhancers	Fetal Kidney	kidney
36	chr9:16582600-16583000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr9:16582600-16583000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:16582600-16583000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr9:16582600-16583000	Enhancers	Fetal Lung	lung

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