Variant report

Variant	rs73647255
Chromosome Location	chr9:72192940-72192941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72192844..72194505-chr9:72195601..72198020,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11139414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11999656	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12000827	1.00[EUR][1000 genomes]
rs12000908	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12006272	0.85[EUR][1000 genomes]
rs12552474	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12553894	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12553941	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12554978	1.00[EUR][1000 genomes]
rs12555100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411439	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1411441	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1411442	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3927537	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4636268	0.85[EUR][1000 genomes]
rs56654380	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57512468	1.00[EUR][1000 genomes]
rs58638129	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58667541	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58898534	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59791186	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60759202	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7036538	0.85[EUR][1000 genomes]
rs72717199	0.85[EUR][1000 genomes]
rs72719005	0.85[EUR][1000 genomes]
rs72719017	0.85[EUR][1000 genomes]
rs72719024	0.97[EUR][1000 genomes]
rs73647250	0.85[EUR][1000 genomes]
rs73647252	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647254	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647256	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647257	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647259	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73647260	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73647261	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73647262	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73647263	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73647264	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73647265	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73647266	0.80[EUR][1000 genomes]
rs7849601	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7861451	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72180400-72208400	Weak transcription	Gastric	stomach
2	chr9:72181000-72195000	Weak transcription	Left Ventricle	heart
3	chr9:72181400-72193000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:72185400-72194000	Weak transcription	Ovary	ovary
5	chr9:72185400-72195200	Weak transcription	Brain Germinal Matrix	brain
6	chr9:72185600-72193000	Weak transcription	Brain Hippocampus Middle	brain
7	chr9:72186200-72195000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:72186200-72200800	Weak transcription	HSMMtube	muscle
9	chr9:72187400-72204800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:72187800-72198600	Weak transcription	NHDF-Ad	bronchial
11	chr9:72188800-72198800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr9:72189200-72193000	Weak transcription	Right Atrium	heart
13	chr9:72189400-72197400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:72189400-72199200	Weak transcription	NH-A	brain
15	chr9:72189800-72196400	Weak transcription	HUVEC	blood vessel
16	chr9:72190000-72193600	Weak transcription	Liver	Liver
17	chr9:72192000-72193400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr9:72192200-72193400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr9:72192200-72193400	Enhancers	HSMM	muscle
20	chr9:72192200-72194400	Enhancers	Fetal Muscle Leg	muscle
21	chr9:72192800-72193000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr9:72192800-72193000	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr9:72192800-72193200	Enhancers	Brain Anterior Caudate	brain
24	chr9:72192800-72193200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr9:72192800-72193400	Enhancers	Adipose Nuclei	Adipose
26	chr9:72192800-72193400	Enhancers	Fetal Muscle Trunk	muscle
27	chr9:72192800-72195800	Enhancers	Fetal Heart	heart
28	chr9:72192800-72197200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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