Variant report

Variant	rs73647256
Chromosome Location	chr9:72194768-72194769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11139414	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11999656	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12000827	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12000908	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12006272	0.85[EUR][1000 genomes]
rs12552474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12553894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12553941	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12554978	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12555100	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411439	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1411441	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1411442	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3927537	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4636268	0.85[EUR][1000 genomes]
rs56654380	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57512468	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58638129	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58667541	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58898534	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59791186	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60759202	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7036538	0.85[EUR][1000 genomes]
rs72717199	0.85[EUR][1000 genomes]
rs72719005	0.85[EUR][1000 genomes]
rs72719017	0.85[EUR][1000 genomes]
rs72719024	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs73647250	0.85[EUR][1000 genomes]
rs73647252	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647254	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647255	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647259	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73647260	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73647261	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73647262	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73647263	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73647264	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73647265	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73647266	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7849601	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7861451	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72180400-72208400	Weak transcription	Gastric	stomach
2	chr9:72181000-72195000	Weak transcription	Left Ventricle	heart
3	chr9:72185400-72195200	Weak transcription	Brain Germinal Matrix	brain
4	chr9:72186200-72195000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:72186200-72200800	Weak transcription	HSMMtube	muscle
6	chr9:72187400-72204800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:72187800-72198600	Weak transcription	NHDF-Ad	bronchial
8	chr9:72188800-72198800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:72189400-72197400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:72189400-72199200	Weak transcription	NH-A	brain
11	chr9:72189800-72196400	Weak transcription	HUVEC	blood vessel
12	chr9:72192800-72195800	Enhancers	Fetal Heart	heart
13	chr9:72192800-72197200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:72193200-72195400	Weak transcription	Brain Anterior Caudate	brain
15	chr9:72193200-72204400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr9:72193400-72195000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:72193400-72195600	Weak transcription	Right Atrium	heart
18	chr9:72193400-72196600	Weak transcription	Adipose Nuclei	Adipose
19	chr9:72193400-72200200	Weak transcription	Right Ventricle	heart
20	chr9:72193600-72195400	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr9:72193800-72195800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr9:72193800-72196000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr9:72193800-72197200	Weak transcription	Brain Angular Gyrus	brain
24	chr9:72194000-72195800	Weak transcription	Fetal Brain Male	brain
25	chr9:72194000-72195800	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr9:72194000-72196000	Enhancers	Duodenum Mucosa	Duodenum
27	chr9:72194000-72196000	Enhancers	Ovary	ovary
28	chr9:72194000-72197200	Enhancers	HepG2	liver
29	chr9:72194200-72195000	Weak transcription	Brain Hippocampus Middle	brain
30	chr9:72194200-72196200	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr9:72194400-72194800	Weak transcription	Fetal Muscle Leg	muscle
32	chr9:72194400-72195400	Flanking Active TSS	Liver	Liver
33	chr9:72194400-72196000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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