Variant report

Variant	rs73647263
Chromosome Location	chr9:72220273-72220274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72207158..72209032-chr9:72218092..72220343,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11139414	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11999656	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12000827	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12000908	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12552474	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12553894	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12553941	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12554978	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12555100	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1411439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1411441	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1411442	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3927537	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56654380	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57512468	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58638129	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58667541	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58898534	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59791186	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60759202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72719024	0.90[EUR][1000 genomes]
rs73647252	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73647254	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73647255	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73647256	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73647257	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73647259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73647260	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73647261	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647262	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647264	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647265	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73647266	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7849601	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3425590	chr9:72217232-72221730	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72215200-72221000	Weak transcription	Right Atrium	heart
2	chr9:72215600-72235200	Weak transcription	Aorta	Aorta
3	chr9:72217200-72221200	Enhancers	Ovary	ovary
4	chr9:72218200-72220400	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:72218800-72220600	Enhancers	HUVEC	blood vessel
6	chr9:72219000-72220600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr9:72219400-72221400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr9:72219600-72221200	Enhancers	NHDF-Ad	bronchial
9	chr9:72219600-72221400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:72219600-72226000	Weak transcription	Liver	Liver
11	chr9:72219800-72220600	Enhancers	Fetal Heart	heart
12	chr9:72219800-72242600	Weak transcription	Left Ventricle	heart
13	chr9:72220200-72220600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:72220200-72220600	Enhancers	Right Ventricle	heart
15	chr9:72220200-72221000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links