Variant report

Variant	rs73649036
Chromosome Location	chr9:16810633-16810634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56751764	0.80[AFR][1000 genomes]
rs56907311	1.00[AMR][1000 genomes]
rs73649047	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16796200-16813400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr9:16796200-16816800	Weak transcription	HSMMtube	muscle
3	chr9:16796400-16824400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:16799200-16813200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:16802800-16811800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr9:16803800-16811800	Weak transcription	NHLF	lung
7	chr9:16804000-16811800	Weak transcription	Fetal Stomach	stomach
8	chr9:16804000-16812000	Weak transcription	Ovary	ovary
9	chr9:16805600-16811000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr9:16806200-16810800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr9:16806800-16811200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr9:16808000-16813600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:16808400-16811600	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:16808600-16812000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr9:16808800-16812400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr9:16809000-16810800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:16809000-16810800	Strong transcription	Osteobl	bone
18	chr9:16809200-16810800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:16809200-16811800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr9:16809200-16812200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:16809400-16812000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr9:16809400-16814000	Weak transcription	Fetal Lung	lung
23	chr9:16809600-16810800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:16809800-16811600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr9:16810000-16810800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:16810000-16810800	Enhancers	NHEK	skin
27	chr9:16810000-16811000	Enhancers	Placenta Amnion	Placenta Amnion
28	chr9:16810200-16811400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr9:16810400-16810800	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr9:16810400-16810800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr9:16810600-16810800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
32	chr9:16810600-16810800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr9:16810600-16810800	Strong transcription	HSMM	muscle
34	chr9:16810600-16810800	Enhancers	NH-A	brain
35	chr9:16810600-16811000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr9:16810600-16811200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr9:16810600-16811600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr9:16810600-16811600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr9:16810600-16812800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr9:16810600-16813200	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr9:16810600-16817200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr9:16810600-16824400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr9:16810600-16824400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links