Variant report

Variant	rs73649997
Chromosome Location	chr9:21920187-21920188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10124816	1.00[EUR][1000 genomes]
rs10965187	1.00[EUR][1000 genomes]
rs28756321	1.00[EUR][1000 genomes]
rs55796448	1.00[EUR][1000 genomes]
rs7042832	1.00[EUR][1000 genomes]
rs73649999	1.00[EUR][1000 genomes]
rs7869195	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv892745	chr9:21857244-22006273	Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21905400-21931000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:21911000-21931200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:21911000-21935800	Weak transcription	HSMM	muscle
4	chr9:21916600-21930800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:21918800-21920600	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr9:21918800-21921000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr9:21918800-21921200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr9:21918800-21921200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr9:21919000-21921000	Enhancers	HUVEC	blood vessel
10	chr9:21919000-21921200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr9:21919200-21921000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr9:21919400-21920200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr9:21919400-21920200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:21919400-21920400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:21919400-21920400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr9:21919400-21920400	Enhancers	Duodenum Mucosa	Duodenum
17	chr9:21919400-21920400	Enhancers	NH-A	brain
18	chr9:21919400-21920600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:21919400-21920600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
20	chr9:21919400-21920600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr9:21919400-21920600	Enhancers	Thymus	Thymus
22	chr9:21919400-21921000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr9:21919400-21921000	Flanking Active TSS	Dnd41	blood
24	chr9:21919600-21920200	Flanking Active TSS	NHEK	skin
25	chr9:21919600-21920400	Enhancers	Primary B cells from peripheral blood	blood
26	chr9:21919600-21920400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr9:21919600-21920400	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr9:21919600-21920400	Enhancers	NHLF	lung
29	chr9:21919600-21920800	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr9:21919600-21920800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr9:21919600-21921200	Enhancers	Primary T cells from cord blood	blood
32	chr9:21919800-21920200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr9:21919800-21920200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr9:21919800-21920200	Active TSS	Hela-S3	cervix
35	chr9:21919800-21931000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr9:21919800-21931000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr9:21919800-21932800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr9:21920000-21920400	Enhancers	Small Intestine	intestine
39	chr9:21920000-21920600	Enhancers	Primary T cells fromperipheralblood	blood
40	chr9:21920000-21922000	Weak transcription	Aorta	Aorta
41	chr9:21920000-21931200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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