Variant report

Variant	rs73655179
Chromosome Location	chr9:100554069-100554070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16924223	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56350461	1.00[AMR][1000 genomes]
rs58156462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58774362	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655178	1.00[AMR][1000 genomes]
rs73655181	1.00[AMR][1000 genomes]
rs73655183	1.00[AMR][1000 genomes]
rs73656851	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100549800-100555000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr9:100552200-100554600	Weak transcription	Placenta	Placenta
3	chr9:100552400-100555600	Weak transcription	HepG2	liver
4	chr9:100553400-100554200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:100553400-100554400	Enhancers	HMEC	breast
6	chr9:100553600-100554400	Enhancers	NHEK	skin
7	chr9:100553800-100554200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:100553800-100554200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:100553800-100554400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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