Variant report

Variant	rs73662664
Chromosome Location	chr8:10855997-10855998
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11995655	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28552524	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs55895510	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56713886	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73662662	0.96[ASN][1000 genomes]
rs73662663	0.96[ASN][1000 genomes]
rs73662665	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73662666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73662668	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73662669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73662670	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73662671	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73662672	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73662673	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73662675	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7815769	1.00[ASN][1000 genomes]
rs7816232	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7821792	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7834150	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9329233	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10854200-10856400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:10854800-10856200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr8:10854800-10856400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr8:10854800-10856400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:10854800-10857200	Enhancers	Fetal Heart	heart
6	chr8:10855000-10856400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:10855200-10856200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr8:10855200-10856600	Enhancers	Left Ventricle	heart
9	chr8:10855200-10856600	Enhancers	HSMMtube	muscle
10	chr8:10855400-10856600	Enhancers	Fetal Muscle Leg	muscle
11	chr8:10855600-10856000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr8:10855600-10856200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr8:10855600-10856400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:10855600-10856400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr8:10855600-10859600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:10855600-10859600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr8:10855800-10856200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr8:10855800-10856400	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr8:10855800-10856800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr8:10855800-10859200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:10855800-10859200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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