Variant report

Variant	rs73662822
Chromosome Location	chr8:10225244-10225245
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10107920	0.90[EUR][1000 genomes]
rs11991747	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12548803	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13258495	0.81[EUR][1000 genomes]
rs17151885	0.90[EUR][1000 genomes]
rs17151901	0.81[EUR][1000 genomes]
rs6601446	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601448	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536280	0.90[EUR][1000 genomes]
rs7818294	0.90[EUR][1000 genomes]
rs7836668	0.90[EUR][1000 genomes]
rs9329220	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv527326	chr8:10199548-10320019	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10192600-10282400	Weak transcription	Gastric	stomach
2	chr8:10193000-10235000	Weak transcription	Pancreas	Pancrea
3	chr8:10196800-10228000	Weak transcription	Liver	Liver
4	chr8:10217600-10226400	Enhancers	Fetal Brain Male	brain
5	chr8:10220400-10226600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr8:10220800-10228000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr8:10221000-10235200	Weak transcription	Right Ventricle	heart
8	chr8:10221200-10228200	Weak transcription	Fetal Intestine Small	intestine
9	chr8:10221200-10229200	Weak transcription	Brain Angular Gyrus	brain
10	chr8:10222200-10227000	Enhancers	HSMM	muscle
11	chr8:10222200-10230000	Weak transcription	Primary T cells from cord blood	blood
12	chr8:10222400-10226400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:10222600-10227400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr8:10223400-10226000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr8:10223600-10226200	Enhancers	Fetal Brain Female	brain
16	chr8:10223600-10228000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr8:10223600-10231400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:10223800-10225600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr8:10223800-10225800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr8:10223800-10227600	Weak transcription	NHDF-Ad	bronchial
21	chr8:10223800-10227800	Weak transcription	Right Atrium	heart
22	chr8:10223800-10229400	Enhancers	HSMMtube	muscle
23	chr8:10223800-10235400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr8:10224000-10225400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr8:10224000-10225400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr8:10224000-10226000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr8:10224000-10226000	Weak transcription	Brain Hippocampus Middle	brain
28	chr8:10224000-10226200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr8:10224000-10228800	Weak transcription	Left Ventricle	heart
30	chr8:10224000-10255800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr8:10224200-10225800	Weak transcription	HMEC	breast
32	chr8:10224200-10228000	Weak transcription	Brain Anterior Caudate	brain
33	chr8:10224200-10228800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr8:10224200-10231000	Weak transcription	Spleen	Spleen
35	chr8:10224400-10226000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr8:10224400-10226400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr8:10224400-10227400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr8:10224400-10235200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr8:10224600-10229000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr8:10224600-10229600	Weak transcription	Fetal Muscle Leg	muscle
41	chr8:10224800-10226600	Enhancers	Placenta Amnion	Placenta Amnion
42	chr8:10225000-10226400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr8:10225200-10225400	Enhancers	Fetal Muscle Trunk	muscle
44	chr8:10225200-10226200	Enhancers	NH-A	brain
45	chr8:10225200-10226400	Enhancers	HUES6 Cell Line	embryonic stem cell

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