Variant report

Variant	rs73662844
Chromosome Location	chr8:10369365-10369366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10369277..10371186-chr8:10371806..10374192,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11991678	1.00[AMR][1000 genomes]
rs11997508	1.00[AMR][1000 genomes]
rs4507727	1.00[AMR][1000 genomes]
rs4582517	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5002891	1.00[AMR][1000 genomes]
rs60348272	0.80[AFR][1000 genomes]
rs61188396	1.00[AMR][1000 genomes]
rs6601477	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6982728	0.83[AFR][1000 genomes]
rs7011758	0.82[AFR][1000 genomes]
rs73662836	1.00[AMR][1000 genomes]
rs73662845	1.00[AMR][1000 genomes]
rs73662881	1.00[AMR][1000 genomes]
rs7830247	1.00[AMR][1000 genomes]
rs7830274	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv610267	chr8:10268736-10526742	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv1024976	chr8:10303099-10385361	Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1030856	chr8:10303099-10439064	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv610268	chr8:10331636-10486652	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
10	nsv1025251	chr8:10343591-10488557	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv1015932	chr8:10357101-10597856	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv1026918	chr8:10359634-10390452	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10367600-10370200	Flanking Active TSS	GM12878-XiMat	blood
2	chr8:10367800-10370000	Enhancers	Fetal Kidney	kidney
3	chr8:10368000-10369600	Enhancers	Fetal Stomach	stomach
4	chr8:10368000-10370600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:10368200-10369400	Enhancers	Colon Smooth Muscle	Colon
6	chr8:10368200-10370200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:10368400-10369400	Enhancers	NHDF-Ad	bronchial
8	chr8:10368400-10369800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:10368600-10369600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr8:10368800-10369400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr8:10368800-10369600	Enhancers	Brain Substantia Nigra	brain
12	chr8:10368800-10369800	Enhancers	Brain Germinal Matrix	brain
13	chr8:10368800-10370200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:10368800-10370600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:10368800-10370600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:10369000-10369400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:10369000-10369600	Enhancers	Brain Anterior Caudate	brain
18	chr8:10369000-10370200	Enhancers	Brain Cingulate Gyrus	brain
19	chr8:10369000-10370200	Enhancers	Brain Hippocampus Middle	brain
20	chr8:10369200-10369600	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr8:10369200-10370000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:10369200-10370200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr8:10369200-10370200	Enhancers	NHEK	skin

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