Variant report

Variant	rs73662852
Chromosome Location	chr8:10386853-10386854
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr8:10386846-10386896	HCPEpiC	choroid plexus:	n/a
2	chr8:10386846-10386896	SK-N-MC	brain:	n/a
3	chr8:10386846-10386896	HNPCEpiC	eye:	n/a
4	chr8:10386846-10386896	K562	blood:	n/a
5	chr8:10386846-10386896	Caco-2	colon:	n/a
6	chr8:10386846-10386896	GM12892	blood:	n/a
7	chr8:10386846-10386896	SKMC	muscle:	n/a
8	chr8:10386846-10386896	HUVEC	blood vessel:	n/a
9	chr8:10386846-10386896	SAEC	small airway:	n/a
10	chr8:10386846-10386896	HRPEpiC	eye:	n/a
11	chr8:10386846-10386896	HCF	heart:	n/a
12	chr8:10386846-10386896	HMEC	breast:	n/a
13	chr8:10386846-10386896	AoSMC	blood vessel:	n/a
14	chr8:10386846-10386896	HAEpiC	amniotic membrane:	n/a
15	chr8:10386846-10386896	HEK293	kidney:	embryo
16	chr8:10386846-10386896	IMR90	lung:	fetal
17	chr8:10386846-10386896	U87	brain:	n/a
18	chr8:10386846-10386896	Hela-S3	cervix:	n/a
19	chr8:10386846-10386896	BE2_C	brain:	n/a
20	chr8:10386846-10386896	HCT-116	colon:	n/a
21	chr8:10386846-10386896	NHDF-neo	bronchial:	n/a
22	chr8:10386846-10386896	MCF-7	breast:	n/a
23	chr8:10386846-10386896	SK-N-SH_RA	brain:	n/a
24	chr8:10386846-10386896	NHBE	bronchial:	n/a
25	chr8:10386846-10386896	ovcar-3	ovarian:	n/a
26	chr8:10386846-10386896	MCF10A-Er-Src	breast:	n/a
27	chr8:10386846-10386896	Hepatocyte	liver:	n/a
28	chr8:10386846-10386896	HCM	heart:	n/a
29	chr8:10386846-10386896	HPAEpiC	pulmonary alveolar:	n/a
30	chr8:10386846-10386896	NT2-D1	testis:	n/a
31	chr8:10386846-10386896	BJ	skin:	n/a
32	chr8:10386846-10386896	NB4	blood:	n/a
33	chr8:10386846-10386896	PFSK-1	brain:	n/a
34	chr8:10386846-10386896	GM12891	blood:	n/a
35	chr8:10386846-10386896	LNCaP	prostate:	n/a
36	chr8:10386846-10386896	GM06990	blood:	n/a
37	chr8:10386846-10386896	H1-hESC	embryonic stem cell:	embryo
38	chr8:10386846-10386896	HL-60	blood:	n/a
39	chr8:10386846-10386896	HRCEpiC	kidney:	n/a
40	chr8:10386846-10386896	AG09319	gingival:	n/a
41	chr8:10386846-10386896	AG04450	lung:	fetal
42	chr8:10386846-10386896	GM12878	blood:	n/a
43	chr8:10386846-10386896	PANC-1	pancreas:	n/a
44	chr8:10386846-10386896	HEEpiC	esophagus:	n/a
45	chr8:10386846-10386896	CMK	blood:	n/a
46	chr8:10386846-10386896	GM19239	blood:	n/a
47	chr8:10386846-10386896	T-47D	breast:	n/a
48	chr8:10386846-10386896	NH-A	brain:	n/a
49	chr8:10386846-10386896	PrEC	prostate:	n/a
50	chr8:10386846-10386896	AG04449	skin:	fetal

No data

Variant related genes	Relation type
PRSS55	CpG island

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10108562	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11774008	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775794	1.00[ASN][1000 genomes]
rs11776423	1.00[ASN][1000 genomes]
rs11776454	1.00[ASN][1000 genomes]
rs11777184	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11778788	1.00[ASN][1000 genomes]
rs11778815	1.00[ASN][1000 genomes]
rs11779652	1.00[ASN][1000 genomes]
rs11780167	1.00[ASN][1000 genomes]
rs11780436	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11780868	1.00[ASN][1000 genomes]
rs11781718	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11783577	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11783848	1.00[ASN][1000 genomes]
rs11785876	1.00[ASN][1000 genomes]
rs11786688	1.00[ASN][1000 genomes]
rs11787384	1.00[ASN][1000 genomes]
rs11787493	1.00[ASN][1000 genomes]
rs13249905	1.00[ASN][1000 genomes]
rs17151969	1.00[ASN][1000 genomes]
rs28361533	1.00[ASN][1000 genomes]
rs28577240	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34994999	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4320513	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4591993	1.00[ASN][1000 genomes]
rs4840494	1.00[ASN][1000 genomes]
rs4840495	1.00[ASN][1000 genomes]
rs4840496	1.00[ASN][1000 genomes]
rs4841364	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4841367	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841379	1.00[ASN][1000 genomes]
rs4841390	1.00[ASN][1000 genomes]
rs4841394	1.00[ASN][1000 genomes]
rs4841395	1.00[ASN][1000 genomes]
rs4841397	1.00[ASN][1000 genomes]
rs4841400	1.00[ASN][1000 genomes]
rs4841406	1.00[ASN][1000 genomes]
rs56096665	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58842562	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60930396	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61743179	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601486	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981847	1.00[ASN][1000 genomes]
rs7006052	1.00[ASN][1000 genomes]
rs73662849	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73662851	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73662853	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73662854	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73662855	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73662857	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73662858	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73662860	0.87[EUR][1000 genomes]
rs7846306	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv610267	chr8:10268736-10526742	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv1030856	chr8:10303099-10439064	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv610268	chr8:10331636-10486652	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
9	nsv1025251	chr8:10343591-10488557	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv1015932	chr8:10357101-10597856	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv1026918	chr8:10359634-10390452	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10383400-10392200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:10384000-10387600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:10386000-10387200	Bivalent Enhancer	Fetal Muscle Leg	muscle
4	chr8:10386200-10387200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:10386400-10387200	Enhancers	Fetal Muscle Trunk	muscle
6	chr8:10386800-10388000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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