Variant report

Variant	rs73662902
Chromosome Location	chr8:10529668-10529669
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
C8orf74	TF binding region
ENSG00000258724	Chromatin interaction
ENSG00000254093	Chromatin interaction
ENSG00000253695	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs61073299	1.00[AMR][1000 genomes]
rs73539548	1.00[AMR][1000 genomes]
rs73539556	1.00[AMR][1000 genomes]
rs73662626	1.00[AMR][1000 genomes]
rs73662892	1.00[AMR][1000 genomes]
rs73662893	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv1015932	chr8:10357101-10597856	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv1021048	chr8:10504395-10591896	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10526800-10537600	Weak transcription	Gastric	stomach
2	chr8:10528200-10530000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr8:10528600-10531000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:10528800-10530000	Enhancers	A549	lung
5	chr8:10529000-10530600	Enhancers	Spleen	Spleen
6	chr8:10529000-10531000	Enhancers	HUVEC	blood vessel
7	chr8:10529200-10530600	Enhancers	Esophagus	oesophagus
8	chr8:10529200-10530600	Enhancers	HMEC	breast
9	chr8:10529400-10530800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr8:10529400-10530800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:10529600-10529800	Flanking Active TSS	Hela-S3	cervix
12	chr8:10529600-10530000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:10529600-10530000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr8:10529600-10530600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:10529600-10530600	Enhancers	Brain Anterior Caudate	brain
16	chr8:10529600-10530800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:10529600-10530800	Enhancers	Lung	lung
18	chr8:10529600-10532800	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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