Variant report

Variant	rs7366333
Chromosome Location	chr1:225864554-225864555
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10915857	0.86[AFR][1000 genomes]
rs17504298	0.81[AMR][1000 genomes]
rs17569722	0.81[AMR][1000 genomes]
rs1857009	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4653647	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4653648	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4653651	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs55965048	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56260304	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6426082	0.80[AFR][1000 genomes]
rs6694288	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7365361	0.86[AFR][1000 genomes]
rs7365591	0.86[AFR][1000 genomes]
rs7519220	0.85[AFR][1000 genomes]
rs7521926	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7552440	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832725	chr1:225726998-225910121	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832736	chr1:225815717-225968619	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225842000-225865000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:225859400-225865000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:225859400-225865000	Weak transcription	HMEC	breast
4	chr1:225859600-225865000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:225859600-225865200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:225863600-225865000	Weak transcription	Right Atrium	heart
7	chr1:225863800-225868600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:225864400-225864800	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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