Variant report

Variant	rs73665010
Chromosome Location	chr8:11002202-11002203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11997750	1.00[AMR][1000 genomes]
rs11997794	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12545002	1.00[AMR][1000 genomes]
rs34246803	1.00[AMR][1000 genomes]
rs55884158	1.00[AMR][1000 genomes]
rs56801900	1.00[AMR][1000 genomes]
rs57452073	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58099531	1.00[AMR][1000 genomes]
rs73662701	1.00[AMR][1000 genomes]
rs73662702	1.00[AMR][1000 genomes]
rs73665003	1.00[AMR][1000 genomes]
rs73665005	1.00[AMR][1000 genomes]
rs73665006	1.00[AMR][1000 genomes]
rs73665007	1.00[AMR][1000 genomes]
rs73665009	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73665011	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73665012	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv1815171	chr8:10940039-11128712	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1025426	chr8:10942929-11037903	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1026331	chr8:10955941-11046394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv1019796	chr8:10979442-11010826	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10966400-11026200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:10982800-11003400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr8:10983000-11003200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr8:10989600-11014200	Weak transcription	Pancreas	Pancrea
5	chr8:10991800-11011800	Weak transcription	Left Ventricle	heart
6	chr8:10997200-11021000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr8:10997400-11003800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:10997400-11006000	Weak transcription	HSMMtube	muscle
9	chr8:10997400-11011200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:10997400-11017400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr8:10999400-11009200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr8:10999400-11021000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:11001600-11021000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr8:11001800-11002400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr8:11001800-11002400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr8:11002000-11002400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:11002000-11002400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr8:11002000-11002600	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr8:11002000-11002600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:11002000-11002800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr8:11002200-11002400	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr8:11002200-11002600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr8:11002200-11002600	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr8:11002200-11002600	Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr8:11002200-11003000	Enhancers	Primary T helper cells fromperipheralblood	blood

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