Variant report

Variant	rs73674137
Chromosome Location	chr7:6617375-6617376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:6615537..6618663-chr7:6638717..6641799,3	K562	blood:
2	chr7:6617184..6619983-chr7:6640766..6643695,2	MCF-7	breast:
3	chr7:6615687..6618664-chr7:6627812..6632591,8	MCF-7	breast:
4	chr7:6614342..6622557-chr7:6625132..6631922,18	K562	blood:
5	chr5:34007981..34008769-chr7:6616675..6617478,2	NB4	blood:
6	chr7:6616780..6617546-chr8:33370685..33371254,2	Hela-S3	cervix:
7	chr7:6486176..6487864-chr7:6615659..6618201,2	MCF-7	breast:
8	chr6:44214258..44215058-chr7:6617166..6617918,2	Hela-S3	cervix:
9	chr11:126225081..126225969-chr7:6616976..6617507,2	Hela-S3	cervix:
10	chr22:37594666..37595464-chr7:6616789..6617450,2	Hela-S3	cervix:
11	chr7:6615703..6619364-chr7:6676501..6679314,4	K562	blood:
12	chr7:6616906..6617576-chr7:112758559..112759124,2	Hela-S3	cervix:
13	chr15:59279868..59280764-chr7:6616794..6617468,2	Hela-S3	cervix:
14	chr16:89988678..89989529-chr7:6617039..6617865,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000259006	Chromatin interaction
ENSG00000205903	Chromatin interaction
ENSG00000096384	Chromatin interaction
ENSG00000110080	Chromatin interaction
ENSG00000146576	Chromatin interaction
ENSG00000157450	Chromatin interaction
ENSG00000133466	Chromatin interaction
ENSG00000239039	Chromatin interaction
ENSG00000129696	Chromatin interaction
ENSG00000242110	Chromatin interaction
ENSG00000164535	Chromatin interaction
ENSG00000232581	Chromatin interaction
ENSG00000214194	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10228227	1.00[AMR][1000 genomes]
rs57439768	1.00[AMR][1000 genomes]
rs73674132	1.00[AMR][1000 genomes]
rs73674135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73674142	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948912	chr7:5803903-6623553	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
3	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
4	nsv1028242	chr7:5819084-6645024	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
5	nsv538712	chr7:5819084-6645024	Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
6	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
7	nsv1020236	chr7:6248930-6690377	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv830895	chr7:6514781-6722092	Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
9	nsv887429	chr7:6520676-6659509	Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
10	nsv887430	chr7:6520676-6668027	Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
11	nsv508444	chr7:6534110-6700527	Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
12	nsv1025220	chr7:6534278-6736802	Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
13	nsv538717	chr7:6534278-6736802	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
14	nsv887431	chr7:6535517-6690240	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
15	nsv515978	chr7:6535517-6698905	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
16	nsv887432	chr7:6535517-6713985	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
17	nsv887433	chr7:6557135-6668027	Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
18	nsv887434	chr7:6557135-6713985	Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
19	nsv606001	chr7:6563109-6683454	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
20	nsv606002	chr7:6567114-6713985	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
21	nsv887435	chr7:6613604-6713985	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6616000-6617400	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr7:6616000-6617400	Active TSS	Skeletal Muscle Female	skeletal muscle
3	chr7:6616000-6617800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:6616000-6618000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:6616000-6618000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:6616000-6618000	Active TSS	NHLF	lung
7	chr7:6616200-6617400	Active TSS	Rectal Smooth Muscle	rectum
8	chr7:6616200-6617600	Active TSS	Liver	Liver
9	chr7:6616200-6617600	Active TSS	NHDF-Ad	bronchial
10	chr7:6616200-6617600	Active TSS	Osteobl	bone
11	chr7:6616200-6617800	Active TSS	H9 Cell Line	embryonic stem cell
12	chr7:6616200-6617800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:6616200-6617800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:6616200-6617800	Active TSS	A549	lung
15	chr7:6616200-6618200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:6616400-6617400	Active TSS	Adipose Nuclei	Adipose
17	chr7:6616400-6617400	Active TSS	Left Ventricle	heart
18	chr7:6616400-6617400	Active TSS	Monocytes-CD14+_RO01746	blood
19	chr7:6616400-6617400	Active TSS	NHEK	skin
20	chr7:6616400-6617600	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr7:6616400-6617600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:6616400-6617600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr7:6616400-6617600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:6616400-6617600	Active TSS	Brain Cingulate Gyrus	brain
25	chr7:6616400-6617600	Active TSS	Esophagus	oesophagus
26	chr7:6616400-6617600	Active TSS	Fetal Brain Female	brain
27	chr7:6616400-6617600	Active TSS	Fetal Stomach	stomach
28	chr7:6616400-6617600	Active TSS	Gastric	stomach
29	chr7:6616400-6617600	Active TSS	Lung	lung
30	chr7:6616400-6617600	Active TSS	Pancreas	Pancrea
31	chr7:6616400-6617600	Active TSS	HSMMtube	muscle
32	chr7:6616400-6617800	Active TSS	H1 Cell Line	embryonic stem cell
33	chr7:6616400-6617800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr7:6616400-6617800	Active TSS	HUES64 Cell Line	embryonic stem cell
35	chr7:6616400-6617800	Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr7:6616400-6617800	Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chr7:6616400-6617800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr7:6616400-6617800	Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr7:6616400-6617800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr7:6616400-6617800	Active TSS	Brain Anterior Caudate	brain
41	chr7:6616400-6617800	Active TSS	Brain Hippocampus Middle	brain
42	chr7:6616400-6617800	Active TSS	Brain Inferior Temporal Lobe	brain
43	chr7:6616400-6617800	Active TSS	Brain Substantia Nigra	brain
44	chr7:6616400-6617800	Active TSS	Fetal Intestine Large	intestine
45	chr7:6616400-6617800	Active TSS	Fetal Intestine Small	intestine
46	chr7:6616400-6617800	Active TSS	Fetal Kidney	kidney
47	chr7:6616400-6617800	Active TSS	Fetal Lung	lung
48	chr7:6616400-6617800	Active TSS	Psoas Muscle	Psoas
49	chr7:6616400-6617800	Active TSS	Right Atrium	heart
50	chr7:6616400-6617800	Active TSS	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links