Variant report
| Variant | rs73681758 |
|---|---|
| Chromosome Location | chr8:58308278-58308279 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:58306190..58308420-chr8:58314986..58316770,2 | MCF-7 | breast: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-FAM110B-12 | chr8:58306505-58308868 | l_3602_chr8:58277926-58304841_testes |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs55685345 | 1.00[AMR][1000 genomes] |
| rs55713077 | 1.00[AMR][1000 genomes] |
| rs55830805 | 1.00[AMR][1000 genomes] |
| rs73680560 | 0.92[AFR][1000 genomes] |
| rs73681757 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73682189 | 1.00[AMR][1000 genomes] |
| rs73682191 | 0.85[AFR][1000 genomes] |
| rs73682195 | 1.00[AMR][1000 genomes] |
| rs73682196 | 1.00[AMR][1000 genomes] |
| rs73682383 | 1.00[AMR][1000 genomes] |
| rs73682389 | 1.00[AMR][1000 genomes] |
| rs73682393 | 1.00[AMR][1000 genomes] |
| rs73682396 | 1.00[AMR][1000 genomes] |
| rs73683829 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73684420 | 1.00[AMR][1000 genomes] |
| rs73684431 | 1.00[AMR][1000 genomes] |
| rs73684432 | 1.00[AMR][1000 genomes] |
| rs73684437 | 1.00[AMR][1000 genomes] |
| rs73684438 | 1.00[AMR][1000 genomes] |
| rs7822656 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7837934 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758161 | chr8:57930392-58474449 | Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | esv2759618 | chr8:57930392-58474449 | Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv533217 | chr8:57991065-58789001 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 4 | nsv890936 | chr8:58266339-58564501 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv524390 | chr8:58305969-58572471 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
