Variant report
| Variant | rs73682210 |
|---|---|
| Chromosome Location | chr8:62199680-62199681 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| CLVS1 | TF binding region |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10504325 | 1.00[AMR][1000 genomes] |
| rs16927200 | 1.00[AMR][1000 genomes] |
| rs16927203 | 1.00[AMR][1000 genomes] |
| rs16927232 | 1.00[AMR][1000 genomes] |
| rs6471948 | 1.00[AMR][1000 genomes] |
| rs6995054 | 1.00[AMR][1000 genomes] |
| rs7011398 | 1.00[AMR][1000 genomes] |
| rs7012774 | 1.00[AMR][1000 genomes] |
| rs73682203 | 0.89[AFR][1000 genomes] |
| rs73682212 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73684479 | 0.89[AFR][1000 genomes] |
| rs7814729 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948922 | chr8:61818964-62475097 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024432 | chr8:62086247-62898782 | Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 3 | nsv831336 | chr8:62188396-62364873 | Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
