Variant report
| Variant | rs73682951 |
|---|---|
| Chromosome Location | chr8:54485310-54485311 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000047249 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs6473853 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73680300 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73680302 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73680456 | 1.00[AMR][1000 genomes] |
| rs73680464 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9693873 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9694040 | 0.91[AFR][1000 genomes] |
| rs9694053 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1813750 | chr8:54471135-54528984 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv2758159 | chr8:54474589-54737473 | Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv2759616 | chr8:54474589-54737473 | Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
