Variant report

Variant	rs73683962
Chromosome Location	chr8:63880078-63880079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16930012	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16930019	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16930036	0.83[AFR][1000 genomes]
rs56118167	0.96[AFR][1000 genomes]
rs57274520	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58063484	0.88[AFR][1000 genomes]
rs59593940	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60280139	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60386932	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61571631	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683965	0.90[AFR][1000 genomes]
rs73684320	0.85[AFR][1000 genomes]
rs73684322	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684325	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684326	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684329	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684515	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684565	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv890963	chr8:63846472-63885100	Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv890964	chr8:63848556-63898146	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv611447	chr8:63867493-63883593	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63868600-63895800	Weak transcription	Fetal Brain Female	brain
2	chr8:63877800-63880200	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:63878000-63892000	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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