Variant report

Variant	rs73684322
Chromosome Location	chr8:63908159-63908160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16930012	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16930019	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56118167	0.88[AFR][1000 genomes]
rs57274520	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58063484	0.81[AFR][1000 genomes]
rs59593940	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60280139	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60386932	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61571631	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683961	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683962	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683963	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683965	0.83[AFR][1000 genomes]
rs73684320	0.89[AFR][1000 genomes]
rs73684325	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684326	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684329	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684515	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684565	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv6227	chr8:63892087-63936952	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63906200-63909400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:63906800-63926200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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