Variant report
| Variant | rs73685728 |
|---|---|
| Chromosome Location | chr8:62025945-62025946 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11988706 | 0.85[AFR][1000 genomes] |
| rs11992507 | 1.00[EUR][1000 genomes] |
| rs16926906 | 1.00[EUR][1000 genomes] |
| rs16926938 | 1.00[EUR][1000 genomes] |
| rs1835758 | 1.00[EUR][1000 genomes] |
| rs56031720 | 1.00[EUR][1000 genomes] |
| rs56175445 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59775198 | 1.00[EUR][1000 genomes] |
| rs59832691 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60420622 | 1.00[EUR][1000 genomes] |
| rs73685724 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73685726 | 1.00[EUR][1000 genomes] |
| rs73685727 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73685729 | 1.00[EUR][1000 genomes] |
| rs73685730 | 1.00[EUR][1000 genomes] |
| rs73685731 | 1.00[EUR][1000 genomes] |
| rs73685732 | 1.00[EUR][1000 genomes] |
| rs73685733 | 1.00[EUR][1000 genomes] |
| rs73685734 | 1.00[EUR][1000 genomes] |
| rs73685735 | 1.00[EUR][1000 genomes] |
| rs73685738 | 1.00[EUR][1000 genomes] |
| rs73685740 | 1.00[EUR][1000 genomes] |
| rs73685742 | 1.00[EUR][1000 genomes] |
| rs73685743 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948922 | chr8:61818964-62475097 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv465697 | chr8:61963699-62025948 | Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv611425 | chr8:61963699-62025948 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:62025400-62027800 | Enhancers | GM12878-XiMat | blood |
| 2 | chr8:62025800-62026200 | Enhancers | Primary B cells from peripheral blood | blood |
