Variant report

Variant	rs73685742
Chromosome Location	chr8:62051292-62051293
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:61567081..61569634-chr8:62050277..62052303,2	K562	blood:
2	chr8:62036289..62038012-chr8:62049623..62051509,2	MCF-7	breast:
3	chr8:62050920..62052213-chr8:62152653..62153352,3	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11992507	1.00[EUR][1000 genomes]
rs16926906	1.00[EUR][1000 genomes]
rs16926938	1.00[EUR][1000 genomes]
rs1835758	1.00[EUR][1000 genomes]
rs56031720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56175445	0.86[AFR][1000 genomes]
rs59775198	1.00[EUR][1000 genomes]
rs59832691	0.86[AFR][1000 genomes]
rs60420622	1.00[EUR][1000 genomes]
rs73685724	0.86[AFR][1000 genomes]
rs73685726	1.00[EUR][1000 genomes]
rs73685727	1.00[EUR][1000 genomes]
rs73685728	1.00[EUR][1000 genomes]
rs73685729	1.00[EUR][1000 genomes]
rs73685730	1.00[EUR][1000 genomes]
rs73685731	1.00[EUR][1000 genomes]
rs73685732	1.00[EUR][1000 genomes]
rs73685733	1.00[EUR][1000 genomes]
rs73685734	1.00[EUR][1000 genomes]
rs73685735	1.00[EUR][1000 genomes]
rs73685738	1.00[EUR][1000 genomes]
rs73685740	1.00[EUR][1000 genomes]
rs73685743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv465698	chr8:62036793-62179465	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611426	chr8:62036793-62179465	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1026243	chr8:62039073-62101123	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62034400-62051400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:62039000-62051400	Weak transcription	Pancreas	Pancrea
3	chr8:62045600-62051400	Weak transcription	GM12878-XiMat	blood
4	chr8:62050600-62051400	Enhancers	Fetal Intestine Large	intestine
5	chr8:62050800-62051400	Enhancers	K562	blood
6	chr8:62051000-62051400	Enhancers	Fetal Brain Male	brain
7	chr8:62051000-62052600	Enhancers	Fetal Heart	heart
8	chr8:62051200-62051400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr8:62051200-62051400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:62051200-62051400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:62051200-62051400	Enhancers	Primary hematopoietic stem cells	blood
12	chr8:62051200-62051400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:62051200-62051400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:62051200-62051400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:62051200-62051400	Enhancers	Brain Angular Gyrus	brain
16	chr8:62051200-62051400	Active TSS	Brain Anterior Caudate	brain
17	chr8:62051200-62051400	Enhancers	Brain Germinal Matrix	brain
18	chr8:62051200-62051400	Enhancers	Duodenum Mucosa	Duodenum
19	chr8:62051200-62051400	Enhancers	Fetal Brain Female	brain
20	chr8:62051200-62051600	Enhancers	Primary B cells from peripheral blood	blood
21	chr8:62051200-62051600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
22	chr8:62051200-62051600	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr8:62051200-62051600	Bivalent Enhancer	Fetal Intestine Small	intestine

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