Variant report

Variant	rs73685821
Chromosome Location	chr8:63776157-63776158
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GGH-2	chr8:63775641-63776740	NONHSAT126908

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11986494	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34300611	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55859915	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56139433	1.00[AMR][1000 genomes]
rs56341071	1.00[AMR][1000 genomes]
rs56678461	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57335101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57834913	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58323797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60134196	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61145974	0.85[AFR][1000 genomes]
rs73683198	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683239	0.85[AFR][1000 genomes]
rs73683240	1.00[AMR][1000 genomes]
rs73683241	0.85[AFR][1000 genomes]
rs73683426	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683428	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683429	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683964	1.00[AMR][1000 genomes]
rs73685431	1.00[AMR][1000 genomes]
rs73685432	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685433	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685434	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685435	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685437	1.00[AMR][1000 genomes]
rs73685442	1.00[AMR][1000 genomes]
rs73685445	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685512	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685515	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685516	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685517	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685818	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685819	1.00[AMR][1000 genomes]
rs73685820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831341	chr8:63658694-63852213	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv890962	chr8:63708519-63812686	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv398476	chr8:63772081-63779449	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63759000-63776400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63775800-63776200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:63776000-63776400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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