Variant report

Variant	rs73700611
Chromosome Location	chr8:110520865-110520866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:110514077..110516433-chr8:110518182..110521221,3	K562	blood:
2	chr8:110520565..110523239-chr8:110549875..110552142,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147654	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10111721	0.87[EUR][1000 genomes]
rs11987659	0.87[EUR][1000 genomes]
rs16879338	0.81[AFR][1000 genomes]
rs2168677	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55786960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55881558	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56162009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56224859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57439661	1.00[EUR][1000 genomes]
rs57909958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61443777	1.00[EUR][1000 genomes]
rs73314998	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700604	1.00[EUR][1000 genomes]
rs73700607	1.00[EUR][1000 genomes]
rs73700608	1.00[EUR][1000 genomes]
rs73700609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700653	1.00[AMR][1000 genomes]
rs73700654	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700862	0.82[AFR][1000 genomes]
rs73700890	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700891	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700892	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700893	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704012	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704013	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704019	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704020	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704043	1.00[EUR][1000 genomes]
rs73704045	1.00[EUR][1000 genomes]
rs9774677	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891281	chr8:110450092-110558622	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110519800-110521200	Enhancers	H9 Cell Line	embryonic stem cell
2	chr8:110519800-110521200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr8:110520200-110521000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:110520200-110521600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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