Variant report

Variant	rs73700650
Chromosome Location	chr8:110561790-110561791
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:110561662-110561862	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:110550506..110554029-chr8:110560195..110563108,6	MCF-7	breast:
2	chr8:110550646..110556695-chr8:110561304..110567831,11	K562	blood:
3	chr8:110560017..110562360-chr8:110654519..110656425,2	MCF-7	breast:
4	chr8:110550694..110556278-chr8:110557032..110565525,15	MCF-7	breast:
5	chr8:110551988..110555719-chr8:110561035..110566674,6	K562	blood:

No data

Variant related genes	Relation type
EBAG9	TF binding region
ENSG00000147642	Chromatin interaction
ENSG00000147654	Chromatin interaction
ENSG00000248050	Chromatin interaction

rs_ID	r²[population]
rs16879428	1.00[AMR][1000 genomes]
rs16879553	1.00[AMR][1000 genomes]
rs16879567	1.00[AMR][1000 genomes]
rs16879636	1.00[AMR][1000 genomes]
rs1892762	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1979299	1.00[AMR][1000 genomes]
rs1979300	1.00[AMR][1000 genomes]
rs2124980	1.00[AMR][1000 genomes]
rs55752435	1.00[AMR][1000 genomes]
rs56932873	1.00[AMR][1000 genomes]
rs57170073	1.00[AMR][1000 genomes]
rs57937650	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59326650	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59478583	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59982879	1.00[AMR][1000 genomes]
rs60463599	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700649	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700652	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700655	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700867	1.00[AMR][1000 genomes]
rs73700869	1.00[AMR][1000 genomes]
rs73700876	1.00[AMR][1000 genomes]
rs73700886	1.00[AMR][1000 genomes]
rs73704006	1.00[AMR][1000 genomes]
rs73704009	1.00[AMR][1000 genomes]
rs73704016	1.00[AMR][1000 genomes]
rs73704022	1.00[AMR][1000 genomes]

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110553000-110564200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr8:110553000-110565000	Weak transcription	Ovary	ovary
3	chr8:110553000-110565600	Weak transcription	Placenta	Placenta
4	chr8:110553000-110569800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr8:110553000-110569800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr8:110553000-110570000	Weak transcription	Lung	lung
7	chr8:110553000-110571800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:110553000-110587000	Weak transcription	Esophagus	oesophagus
9	chr8:110553400-110566600	Weak transcription	Fetal Intestine Large	intestine
10	chr8:110553400-110569800	Weak transcription	Osteobl	bone
11	chr8:110553800-110566800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:110553800-110566800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:110553800-110569600	Weak transcription	Fetal Kidney	kidney
14	chr8:110553800-110569800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr8:110553800-110613000	Weak transcription	NHLF	lung
16	chr8:110554000-110562000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:110554000-110563000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr8:110554000-110563600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:110554000-110563600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr8:110554000-110563600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr8:110554000-110565400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:110554000-110565400	Weak transcription	HSMM	muscle
23	chr8:110554000-110565600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:110554000-110565800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr8:110554000-110566600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr8:110554000-110567000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr8:110554000-110567000	Weak transcription	NH-A	brain
28	chr8:110554000-110567800	Weak transcription	Fetal Thymus	thymus
29	chr8:110554000-110569400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:110554000-110569600	Weak transcription	Fetal Brain Female	brain
31	chr8:110554000-110569800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr8:110554000-110569800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr8:110554000-110569800	Weak transcription	Fetal Brain Male	brain
34	chr8:110554000-110569800	Weak transcription	Left Ventricle	heart
35	chr8:110554000-110569800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr8:110554000-110569800	Weak transcription	Small Intestine	intestine
37	chr8:110554000-110569800	Weak transcription	Thymus	Thymus
38	chr8:110554000-110570000	Weak transcription	Fetal Stomach	stomach
39	chr8:110554000-110570000	Weak transcription	Right Ventricle	heart
40	chr8:110554000-110571400	Weak transcription	Fetal Intestine Small	intestine
41	chr8:110554000-110571400	Weak transcription	Pancreas	Pancrea
42	chr8:110554000-110583000	Weak transcription	HMEC	breast
43	chr8:110554000-110589200	Weak transcription	Psoas Muscle	Psoas
44	chr8:110554200-110561800	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr8:110554200-110564200	Weak transcription	Primary B cells from peripheral blood	blood
46	chr8:110554200-110565800	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr8:110554200-110566600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr8:110554200-110567200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr8:110554200-110569800	Weak transcription	Fetal Muscle Leg	muscle
50	chr8:110554200-110569800	Weak transcription	HSMMtube	muscle

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