Variant report
| Variant | rs73700828 |
|---|---|
| Chromosome Location | chr8:110190726-110190727 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:110176070..110178321-chr8:110188614..110190804,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs16879239 | 1.00[AMR][1000 genomes] |
| rs16879247 | 1.00[AMR][1000 genomes] |
| rs16879267 | 1.00[AMR][1000 genomes] |
| rs16879294 | 1.00[AMR][1000 genomes] |
| rs16879299 | 1.00[AMR][1000 genomes] |
| rs16879374 | 1.00[AMR][1000 genomes] |
| rs1870390 | 1.00[AMR][1000 genomes] |
| rs57770774 | 0.82[AFR][1000 genomes] |
| rs58174582 | 1.00[AMR][1000 genomes] |
| rs58370875 | 1.00[AMR][1000 genomes] |
| rs58371935 | 0.89[AFR][1000 genomes] |
| rs59199171 | 1.00[AMR][1000 genomes] |
| rs59651628 | 1.00[AMR][1000 genomes] |
| rs60279960 | 1.00[AMR][1000 genomes] |
| rs60417655 | 1.00[AMR][1000 genomes] |
| rs60584579 | 1.00[AMR][1000 genomes] |
| rs61706619 | 1.00[AMR][1000 genomes] |
| rs73700806 | 0.82[AFR][1000 genomes] |
| rs73700810 | 0.89[AFR][1000 genomes] |
| rs73700814 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700815 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700826 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700827 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700831 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700837 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700840 | 1.00[AMR][1000 genomes] |
| rs73700846 | 1.00[AMR][1000 genomes] |
| rs73700849 | 1.00[AMR][1000 genomes] |
| rs73700852 | 1.00[AMR][1000 genomes] |
| rs73700853 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023204 | chr8:110169573-110303085 | Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031663 | chr8:110177432-110303085 | Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:110186000-110192200 | Weak transcription | HSMMtube | muscle |
| 2 | chr8:110190400-110191400 | Enhancers | GM12878-XiMat | blood |
