Variant report

Variant	rs73704006
Chromosome Location	chr8:110462722-110462723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs16879336	1.00[AMR][1000 genomes]
rs16879428	1.00[AMR][1000 genomes]
rs16879553	1.00[AMR][1000 genomes]
rs16879566	0.86[AFR][1000 genomes]
rs16879567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16879571	1.00[AFR][1000 genomes]
rs16879636	1.00[AMR][1000 genomes]
rs1892762	1.00[AMR][1000 genomes]
rs1979299	1.00[AMR][1000 genomes]
rs1979300	1.00[AMR][1000 genomes]
rs2124980	1.00[AMR][1000 genomes]
rs55752435	1.00[AMR][1000 genomes]
rs56238419	1.00[AMR][1000 genomes]
rs56932873	1.00[AMR][1000 genomes]
rs57170073	1.00[AMR][1000 genomes]
rs57175707	0.89[AFR][1000 genomes]
rs57937650	1.00[AMR][1000 genomes]
rs59326650	1.00[AMR][1000 genomes]
rs59478583	1.00[AMR][1000 genomes]
rs59982879	1.00[AMR][1000 genomes]
rs60463599	1.00[AMR][1000 genomes]
rs73700649	1.00[AMR][1000 genomes]
rs73700650	1.00[AMR][1000 genomes]
rs73700652	1.00[AMR][1000 genomes]
rs73700655	1.00[AMR][1000 genomes]
rs73700858	1.00[AMR][1000 genomes]
rs73700860	1.00[AMR][1000 genomes]
rs73700867	1.00[AMR][1000 genomes]
rs73700869	1.00[AMR][1000 genomes]
rs73700876	1.00[AMR][1000 genomes]
rs73700886	1.00[AMR][1000 genomes]
rs73704007	0.95[AFR][1000 genomes]
rs73704009	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704014	0.80[AFR][1000 genomes]
rs73704016	1.00[AMR][1000 genomes]
rs73704021	0.80[AFR][1000 genomes]
rs73704022	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv891280	chr8:110346363-110465481	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1018510	chr8:110403496-110504029	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv891281	chr8:110450092-110558622	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110455600-110463000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:110457800-110462800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:110457800-110462800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:110459400-110462800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr8:110462600-110462800	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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