Variant report
| Variant | rs73704022 |
|---|---|
| Chromosome Location | chr8:110489806-110489807 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr8:110489556-110489808 | K562 | blood: | n/a | chr8:110489716-110489727 |
| 2 | CEBPB | chr8:110489583-110489897 | HepG2 | liver: | n/a | chr8:110489716-110489727 |
| 3 | CEBPB | chr8:110489630-110489818 | A549 | lung: | n/a | chr8:110489716-110489727 |
| 4 | CEBPB | chr8:110489582-110489862 | IMR90 | lung: | n/a | chr8:110489716-110489727 |
| 5 | CEBPB | chr8:110489541-110489912 | K562 | blood: | n/a | chr8:110489716-110489727 |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:110489593..110491744-chr8:110491795..110494746,2 | K562 | blood: | |
| 2 | chr8:110486659..110490072-chr8:110550556..110553701,4 | MCF-7 | breast: | |
| 3 | chr8:110485934..110489021-chr8:110489156..110492335,3 | MCF-7 | breast: | |
| 4 | chr8:110486322..110490229-chr8:110490493..110494144,5 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| PKHD1L1 | TF binding region |
| ENSG00000147654 | Chromatin interaction |
| ENSG00000205038 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs16879336 | 1.00[AMR][1000 genomes] |
| rs16879428 | 1.00[AMR][1000 genomes] |
| rs16879553 | 1.00[AMR][1000 genomes] |
| rs16879567 | 1.00[AMR][1000 genomes] |
| rs16879636 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1892762 | 1.00[AMR][1000 genomes] |
| rs1979299 | 1.00[AMR][1000 genomes] |
| rs1979300 | 1.00[AMR][1000 genomes] |
| rs2124980 | 1.00[AMR][1000 genomes] |
| rs55752435 | 1.00[AMR][1000 genomes] |
| rs56238419 | 1.00[AMR][1000 genomes] |
| rs56932873 | 1.00[AMR][1000 genomes] |
| rs57170073 | 1.00[AMR][1000 genomes] |
| rs57937650 | 1.00[AMR][1000 genomes] |
| rs59326650 | 1.00[AMR][1000 genomes] |
| rs59478583 | 1.00[AMR][1000 genomes] |
| rs59982879 | 1.00[AMR][1000 genomes] |
| rs60463599 | 1.00[AMR][1000 genomes] |
| rs73700649 | 1.00[AMR][1000 genomes] |
| rs73700650 | 1.00[AMR][1000 genomes] |
| rs73700652 | 1.00[AMR][1000 genomes] |
| rs73700655 | 1.00[AMR][1000 genomes] |
| rs73700858 | 1.00[AMR][1000 genomes] |
| rs73700860 | 1.00[AMR][1000 genomes] |
| rs73700867 | 1.00[AMR][1000 genomes] |
| rs73700869 | 1.00[AMR][1000 genomes] |
| rs73700876 | 1.00[AMR][1000 genomes] |
| rs73700886 | 1.00[AMR][1000 genomes] |
| rs73704006 | 1.00[AMR][1000 genomes] |
| rs73704009 | 1.00[AMR][1000 genomes] |
| rs73704016 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018510 | chr8:110403496-110504029 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv891281 | chr8:110450092-110558622 | Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:110463200-110492400 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr8:110486800-110491200 | Weak transcription | Stomach Mucosa | stomach |
| 3 | chr8:110487800-110495000 | Weak transcription | Liver | Liver |
