Variant report

Variant	rs737054
Chromosome Location	chr6:35575487-35575488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11754441	0.89[EUR][1000 genomes]
rs4713902	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9348979	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9394307	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1031987	chr6:35476562-35579375	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv462913	chr6:35502202-35592744	Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv602923	chr6:35502202-35592744	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv517211	chr6:35502202-35607571	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1017625	chr6:35505311-35576552	Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1019593	chr6:35505311-35579375	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
10	nsv1022049	chr6:35506731-35576552	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
11	nsv1025296	chr6:35507179-35579375	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
12	nsv885801	chr6:35537406-35671651	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
13	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs737054	RP3-340B19.3	cis	Thyroid	GTEx

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35545000-35601800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:35558600-35580400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:35565400-35579800	Weak transcription	Ovary	ovary
4	chr6:35569400-35591600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:35569600-35587800	Weak transcription	Placenta	Placenta
6	chr6:35570200-35608600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:35570600-35577400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:35570600-35578600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:35570600-35578600	Weak transcription	Fetal Brain Male	brain
10	chr6:35570600-35579000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:35570600-35580000	Weak transcription	Small Intestine	intestine
12	chr6:35570600-35583400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr6:35570600-35587800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:35570800-35579000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:35570800-35579000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:35570800-35580000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:35570800-35585200	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:35570800-35586000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr6:35570800-35586200	Weak transcription	Fetal Stomach	stomach
20	chr6:35570800-35586200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr6:35570800-35611400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr6:35571000-35580400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:35571000-35582200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr6:35571000-35590600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:35571000-35602400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr6:35571200-35578800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:35571200-35580000	Weak transcription	Adipose Nuclei	Adipose
28	chr6:35571200-35580000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr6:35571200-35580200	Weak transcription	Primary B cells from cord blood	blood
30	chr6:35571200-35585400	Weak transcription	Colon Smooth Muscle	Colon
31	chr6:35571200-35587200	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr6:35571200-35611800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr6:35571400-35581400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:35571400-35587200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr6:35571600-35578400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr6:35571600-35578800	Weak transcription	Brain Hippocampus Middle	brain
37	chr6:35571800-35583000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:35571800-35583400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr6:35572000-35578600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:35572000-35578600	Weak transcription	Aorta	Aorta
41	chr6:35572000-35578800	Weak transcription	Fetal Heart	heart
42	chr6:35572000-35579600	Weak transcription	Stomach Smooth Muscle	stomach
43	chr6:35572000-35581600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr6:35572000-35584800	Weak transcription	Brain Angular Gyrus	brain
45	chr6:35572000-35585600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr6:35572200-35577000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:35572200-35578800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:35572200-35586000	Weak transcription	Brain Cingulate Gyrus	brain
49	chr6:35572400-35579200	Weak transcription	HepG2	liver
50	chr6:35573000-35584200	Strong transcription	Sigmoid Colon	Sigmoid Colon

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