Variant report

Variant	rs73708224
Chromosome Location	chr8:129869265-129869266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:129865860..129869579-chr8:129877876..129880689,4	K562	blood:
2	chr8:129868858..129872488-chr8:129878808..129881369,3	K562	blood:
3	chr8:128746642..128751324-chr8:129868978..129871457,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136997	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1519840	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519858	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16903647	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16903648	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16903668	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16903677	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16903682	1.00[ASN][1000 genomes]
rs2090682	0.81[AFR][1000 genomes]
rs35208579	0.87[AFR][1000 genomes]
rs35643497	1.00[ASN][1000 genomes]
rs35989243	1.00[ASN][1000 genomes]
rs59460028	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982834	0.86[AFR][1000 genomes]
rs6994591	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014227	1.00[EUR][1000 genomes]
rs7015615	1.00[ASN][1000 genomes]
rs73708238	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73708240	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7463635	0.81[AFR][1000 genomes]
rs756123	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817073	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7820704	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821002	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823984	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846441	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517445	chr8:129859924-129881299	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129864200-129873200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:129864200-129873200	Weak transcription	NH-A	brain
3	chr8:129864400-129873400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:129866600-129873200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:129866800-129869600	Weak transcription	Dnd41	blood
6	chr8:129867200-129873200	Weak transcription	Osteobl	bone
7	chr8:129867800-129870600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:129868000-129873000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr8:129869200-129869400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:129869200-129870200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:129869200-129871800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:129869200-129871800	Weak transcription	NHDF-Ad	bronchial
13	chr8:129869200-129873000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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