Variant report

Variant	rs73712575
Chromosome Location	chr7:101499784-101499785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:31)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:31 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:101498602..101500393-chr7:101528605..101531066,2	K562	blood:
2	chr7:101497702..101501860-chr7:101544397..101548440,5	K562	blood:
3	chr7:101497978..101502748-chr7:101507506..101511659,5	K562	blood:
4	chr7:101499177..101500884-chr7:101592155..101594587,2	K562	blood:
5	chr7:101498548..101502350-chr7:101502411..101507839,8	MCF-7	breast:
6	chr7:101499203..101501714-chr7:101524450..101526322,2	MCF-7	breast:
7	chr7:101473490..101475877-chr7:101498449..101501433,2	MCF-7	breast:
8	chr7:101499241..101502568-chr7:101516152..101518737,4	K562	blood:
9	chr7:101455967..101463882-chr7:101497000..101502046,12	K562	blood:
10	chr7:101498625..101501540-chr7:101618895..101621523,2	MCF-7	breast:
11	chr7:101478135..101485394-chr7:101496220..101502463,10	K562	blood:
12	chr7:101498446..101503068-chr7:101525023..101527426,4	MCF-7	breast:
13	chr7:101456333..101461122-chr7:101497947..101501643,4	MCF-7	breast:
14	chr7:101497931..101500798-chr7:101614587..101617565,2	MCF-7	breast:
15	chr7:101488631..101490666-chr7:101498295..101500153,2	K562	blood:
16	chr7:101499739..101501403-chr7:101611474..101612975,2	K562	blood:
17	chr7:101446704..101449340-chr7:101499387..101502375,2	K562	blood:
18	chr7:101498433..101500153-chr7:101541432..101543362,2	K562	blood:
19	chr7:101498337..101502406-chr7:101523360..101525757,3	K562	blood:
20	chr7:101457183..101463031-chr7:101497949..101502134,11	MCF-7	breast:
21	chr7:101492252..101496908-chr7:101497174..101502895,8	K562	blood:
22	chr7:101498913..101502613-chr7:101503712..101508254,12	K562	blood:
23	chr7:101499113..101502991-chr7:101502997..101507438,12	K562	blood:
24	chr7:101456928..101460439-chr7:101497000..101502046,10	K562	blood:
25	chr7:101481276..101483838-chr7:101497755..101500225,2	K562	blood:
26	chr7:101460966..101463882-chr7:101498050..101500277,2	K562	blood:
27	chr7:101498337..101501092-chr7:101523360..101525337,2	K562	blood:
28	chr7:101498814..101500323-chr7:101586535..101589205,2	K562	blood:
29	chr7:101497978..101500551-chr7:101508807..101510761,2	K562	blood:
30	chr7:101499493..101501322-chr7:101514086..101515817,2	K562	blood:
31	chr7:101497702..101500077-chr7:101546251..101547968,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10232848	0.84[AFR][1000 genomes]
rs10244568	0.92[AFR][1000 genomes]
rs10271358	0.84[AFR][1000 genomes]
rs10272452	0.84[AFR][1000 genomes]
rs6945158	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101476200-101500000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:101492200-101499800	Weak transcription	Psoas Muscle	Psoas
3	chr7:101495000-101501600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:101496400-101499800	Enhancers	Thymus	Thymus
5	chr7:101496600-101499800	Enhancers	Fetal Thymus	thymus
6	chr7:101497000-101499800	Enhancers	Left Ventricle	heart
7	chr7:101497000-101500000	Enhancers	Fetal Muscle Leg	muscle
8	chr7:101497200-101499800	Weak transcription	Gastric	stomach
9	chr7:101497200-101501600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:101497600-101499800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:101497600-101501000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:101497800-101499800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr7:101497800-101499800	Weak transcription	Spleen	Spleen
14	chr7:101497800-101500000	Enhancers	Right Atrium	heart
15	chr7:101498000-101502400	Weak transcription	Brain Germinal Matrix	brain
16	chr7:101498200-101499800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:101498200-101499800	Enhancers	Colonic Mucosa	Colon
18	chr7:101498200-101499800	Enhancers	Fetal Muscle Trunk	muscle
19	chr7:101498400-101499800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr7:101498400-101499800	Enhancers	Right Ventricle	heart
21	chr7:101498400-101500400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr7:101498400-101502400	Weak transcription	Brain Angular Gyrus	brain
23	chr7:101498600-101499800	Weak transcription	Esophagus	oesophagus
24	chr7:101498600-101499800	Enhancers	Placenta	Placenta
25	chr7:101498600-101499800	Weak transcription	Ovary	ovary
26	chr7:101498800-101499800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr7:101498800-101499800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:101498800-101504000	Weak transcription	Fetal Brain Female	brain
29	chr7:101499000-101499800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr7:101499000-101501200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
31	chr7:101499000-101501200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr7:101499000-101501400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
33	chr7:101499200-101499800	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr7:101499200-101499800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr7:101499200-101499800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr7:101499200-101499800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr7:101499200-101499800	Enhancers	Stomach Mucosa	stomach
38	chr7:101499200-101499800	Flanking Active TSS	A549	lung
39	chr7:101499200-101500000	Genic enhancers	Fetal Intestine Small	intestine
40	chr7:101499200-101500000	Enhancers	Fetal Stomach	stomach
41	chr7:101499200-101500200	Flanking Active TSS	K562	blood
42	chr7:101499200-101500200	Active TSS	NHLF	lung
43	chr7:101499200-101501000	Enhancers	Small Intestine	intestine
44	chr7:101499200-101501200	Flanking Active TSS	Primary B cells from cord blood	blood
45	chr7:101499200-101501200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr7:101499200-101501600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr7:101499200-101501800	Flanking Active TSS	Primary hematopoietic stem cells	blood
48	chr7:101499200-101501800	Flanking Active TSS	GM12878-XiMat	blood
49	chr7:101499400-101499800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr7:101499400-101499800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links