Variant report

Variant	rs73712588
Chromosome Location	chr7:101566230-101566231
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101560159..101562583-chr7:101565295..101567111,2	MCF-7	breast:
2	chr7:101564549..101567333-chr7:101614415..101616555,2	MCF-7	breast:
3	chr7:101457193..101459840-chr7:101565538..101567410,2	K562	blood:
4	chr7:101563285..101566884-chr7:101569000..101572598,3	MCF-7	breast:
5	chr7:101565825..101568824-chr7:101578278..101580561,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73712587	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv482846	chr7:101539981-101707666	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv888827	chr7:101562674-101650302	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101544000-101569800	Weak transcription	HMEC	breast
2	chr7:101544200-101579800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:101555400-101567400	Weak transcription	HUVEC	blood vessel
4	chr7:101556000-101572600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:101556400-101566800	Weak transcription	NHDF-Ad	bronchial
6	chr7:101557400-101566400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:101557400-101573600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:101557600-101568200	Weak transcription	Brain Anterior Caudate	brain
9	chr7:101557600-101571200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:101558000-101567800	Strong transcription	Dnd41	blood
11	chr7:101558000-101570200	Strong transcription	Fetal Stomach	stomach
12	chr7:101558200-101570400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr7:101558400-101567000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr7:101558600-101567000	Weak transcription	Psoas Muscle	Psoas
15	chr7:101558600-101577800	Weak transcription	Brain Angular Gyrus	brain
16	chr7:101560000-101568200	Weak transcription	Brain Substantia Nigra	brain
17	chr7:101560000-101577000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr7:101560400-101568600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr7:101561200-101584000	Weak transcription	Hela-S3	cervix
20	chr7:101561400-101572600	Weak transcription	GM12878-XiMat	blood
21	chr7:101561600-101568200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr7:101561600-101569400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:101561600-101571000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr7:101561600-101575200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr7:101561600-101577600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr7:101561800-101567000	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr7:101561800-101571000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr7:101561800-101571200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr7:101561800-101574800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr7:101561800-101577400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr7:101561800-101579200	Weak transcription	NHEK	skin
32	chr7:101562000-101578000	Weak transcription	Colonic Mucosa	Colon
33	chr7:101562000-101583600	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr7:101562200-101569800	Weak transcription	Primary B cells from cord blood	blood
35	chr7:101562600-101566600	Weak transcription	A549	lung
36	chr7:101562600-101575400	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr7:101562800-101567200	Weak transcription	Brain Germinal Matrix	brain
38	chr7:101562800-101573400	Weak transcription	Primary B cells from peripheral blood	blood
39	chr7:101562800-101578200	Weak transcription	Fetal Kidney	kidney
40	chr7:101563000-101566400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr7:101563000-101566800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:101563000-101567000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr7:101563000-101567400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr7:101563000-101568000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr7:101563000-101577200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr7:101563000-101578800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr7:101563200-101566400	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr7:101563200-101570800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr7:101563200-101570800	Weak transcription	Brain Hippocampus Middle	brain
50	chr7:101563200-101571000	Weak transcription	Primary hematopoietic stem cells	blood

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