Variant report

Variant	rs73714172
Chromosome Location	chr7:104563683-104563684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:104563298..104563957-chr7:104624128..104624673,3	K562	blood:
2	chr7:104563103..104563980-chr7:104621812..104622359,3	K562	blood:
3	chr7:104563679..104565280-chr7:104568067..104569719,2	K562	blood:
4	chr7:104563436..104563948-chr7:104681191..104681853,2	MCF-7	breast:
5	chr7:104562700..104564901-chr7:104622729..104625320,2	MCF-7	breast:
6	chr7:104560247..104565099-chr7:104651961..104655493,7	MCF-7	breast:
7	chr7:104563318..104568443-chr7:104653143..104655572,8	K562	blood:
8	chr7:104563090..104564028-chr7:105069801..105070415,2	K562	blood:
9	chr7:104561816..104567252-chr7:104650571..104656074,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000239569	Chromatin interaction
ENSG00000228393	Chromatin interaction
ENSG00000005483	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs60768252	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104558400-104571600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:104561600-104564000	Enhancers	NHDF-Ad	bronchial
3	chr7:104561600-104564200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:104562200-104564000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:104562400-104564000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:104562400-104564000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:104562400-104564200	Enhancers	Osteobl	bone
8	chr7:104562400-104567000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:104562600-104563800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:104562600-104564000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr7:104562600-104564000	Enhancers	Adipose Nuclei	Adipose
12	chr7:104562600-104564000	Enhancers	Fetal Stomach	stomach
13	chr7:104562600-104564000	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr7:104562600-104564200	Enhancers	HUVEC	blood vessel
15	chr7:104562600-104564600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr7:104562600-104571800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:104562800-104563800	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr7:104562800-104564000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr7:104562800-104564000	Enhancers	Liver	Liver
20	chr7:104562800-104564000	Enhancers	HSMM	muscle
21	chr7:104562800-104564000	Enhancers	NH-A	brain
22	chr7:104562800-104564000	Enhancers	NHLF	lung
23	chr7:104562800-104564200	Enhancers	Stomach Mucosa	stomach
24	chr7:104563000-104563800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr7:104563000-104564000	Enhancers	K562	blood
26	chr7:104563200-104563800	Enhancers	Left Ventricle	heart
27	chr7:104563200-104564000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr7:104563200-104564000	Enhancers	Brain Cingulate Gyrus	brain
29	chr7:104563200-104564000	Enhancers	Brain Hippocampus Middle	brain
30	chr7:104563200-104564000	Flanking Active TSS	Fetal Intestine Large	intestine
31	chr7:104563200-104564000	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr7:104563200-104564000	Enhancers	GM12878-XiMat	blood
33	chr7:104563200-104567200	Active TSS	Fetal Intestine Small	intestine
34	chr7:104563400-104563800	Enhancers	Brain Anterior Caudate	brain
35	chr7:104563400-104563800	Enhancers	Fetal Heart	heart
36	chr7:104563400-104563800	Flanking Active TSS	Fetal Kidney	kidney
37	chr7:104563400-104563800	Enhancers	Pancreas	Pancrea
38	chr7:104563400-104563800	Enhancers	Right Atrium	heart
39	chr7:104563400-104563800	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr7:104563400-104564000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr7:104563400-104564000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr7:104563400-104564000	Enhancers	Brain Angular Gyrus	brain
43	chr7:104563400-104564000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr7:104563400-104564000	Enhancers	Brain Substantia Nigra	brain
45	chr7:104563400-104564000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
46	chr7:104563400-104564200	Enhancers	Primary B cells from peripheral blood	blood
47	chr7:104563400-104564200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr7:104563400-104564200	Enhancers	Colon Smooth Muscle	Colon
49	chr7:104563400-104569200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr7:104563600-104563800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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