Variant report

Variant	rs73717956
Chromosome Location	chr7:104734507-104734508
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104733055..104736712-chr7:104736895..104739476,3	K562	blood:
2	chr7:104732839..104734628-chr7:104739155..104740803,2	K562	blood:
3	chr7:104661691..104664567-chr7:104734113..104735881,2	K562	blood:
4	chr7:104652808..104655349-chr7:104732756..104735300,2	MCF-7	breast:
5	chr7:104652687..104656550-chr7:104731498..104735998,5	K562	blood:

Variant related genes	Relation type
ENSG00000228393	Chromatin interaction
ENSG00000239569	Chromatin interaction
ENSG00000005483	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs13233843	1.00[AMR][1000 genomes]
rs55638165	1.00[AMR][1000 genomes]
rs55715849	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56162214	1.00[AMR][1000 genomes]
rs56361562	1.00[AMR][1000 genomes]
rs56890093	1.00[AMR][1000 genomes]
rs56966676	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57051326	1.00[AMR][1000 genomes]
rs57160311	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57402653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57741635	1.00[AMR][1000 genomes]
rs58404848	1.00[AMR][1000 genomes]
rs58907242	1.00[AMR][1000 genomes]
rs60436179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61102011	1.00[AMR][1000 genomes]
rs61280887	1.00[AMR][1000 genomes]
rs61285225	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73421710	1.00[AMR][1000 genomes]
rs73715406	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73715440	1.00[AMR][1000 genomes]
rs73715442	1.00[AMR][1000 genomes]
rs73715443	1.00[AMR][1000 genomes]
rs73715444	1.00[AMR][1000 genomes]
rs73715445	1.00[AMR][1000 genomes]
rs73715447	1.00[AMR][1000 genomes]
rs73715450	1.00[AMR][1000 genomes]
rs73715543	1.00[AMR][1000 genomes]
rs73715546	1.00[AMR][1000 genomes]
rs73715548	1.00[AMR][1000 genomes]
rs73715557	1.00[AMR][1000 genomes]
rs73716461	1.00[AMR][1000 genomes]
rs73716462	1.00[AMR][1000 genomes]
rs73716469	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73716471	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73716651	1.00[AMR][1000 genomes]
rs73717964	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718215	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718216	1.00[AMR][1000 genomes]
rs73718217	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718218	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718222	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888927	chr7:104614664-104781644	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv608068	chr7:104622402-104757483	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104677800-104758200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:104678000-104812200	Strong transcription	Dnd41	blood
3	chr7:104681200-104758400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:104681200-104760400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr7:104685600-104759000	Strong transcription	Primary B cells from peripheral blood	blood
6	chr7:104699800-104738400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr7:104701400-104758800	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr7:104702200-104738200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:104702200-104747800	Weak transcription	Stomach Mucosa	stomach
10	chr7:104702800-104758800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:104703600-104759000	Strong transcription	Fetal Intestine Large	intestine
12	chr7:104703800-104735400	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:104704000-104745200	Weak transcription	Psoas Muscle	Psoas
14	chr7:104706000-104760200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:104707000-104739200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr7:104709600-104744400	Weak transcription	Right Ventricle	heart
17	chr7:104712400-104758800	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr7:104712600-104736600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr7:104713600-104735600	Strong transcription	Adipose Nuclei	Adipose
20	chr7:104718200-104750600	Weak transcription	Fetal Brain Male	brain
21	chr7:104720600-104746200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:104720800-104739200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr7:104721400-104744600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr7:104721600-104744800	Weak transcription	Spleen	Spleen
25	chr7:104721600-104749400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr7:104722200-104759400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr7:104723200-104737000	Weak transcription	Fetal Heart	heart
28	chr7:104724000-104743200	Weak transcription	Brain Angular Gyrus	brain
29	chr7:104724200-104744400	Weak transcription	Aorta	Aorta
30	chr7:104724200-104748000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:104724600-104734800	Weak transcription	Brain Hippocampus Middle	brain
32	chr7:104724800-104743200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr7:104724800-104744000	Weak transcription	Small Intestine	intestine
34	chr7:104726400-104744600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr7:104726600-104736000	Strong transcription	Primary B cells from cord blood	blood
36	chr7:104726800-104737200	Strong transcription	Osteobl	bone
37	chr7:104726800-104743800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr7:104726800-104744800	Weak transcription	Gastric	stomach
39	chr7:104726800-104747800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr7:104727000-104736200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr7:104727800-104737800	Strong transcription	Fetal Lung	lung
42	chr7:104727800-104738600	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr7:104727800-104758200	Strong transcription	Fetal Thymus	thymus
44	chr7:104727800-104759200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr7:104727800-104759800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr7:104727800-104760400	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr7:104728000-104734800	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr7:104728000-104737600	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr7:104728000-104738000	Strong transcription	HSMM	muscle
50	chr7:104728000-104760200	Strong transcription	Rectal Mucosa Donor 31	rectum

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