Variant report

Variant	rs73718137
Chromosome Location	chr7:112583618-112583619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:112578476..112580812-chr7:112583356..112586040,2	MCF-7	breast:
2	chr7:112583353..112585564-chr7:112597999..112600804,2	MCF-7	breast:
3	chr7:112577667..112580375-chr7:112582881..112584475,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164603	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10228144	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10229725	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10232962	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10241709	1.00[EUR][1000 genomes]
rs10265199	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268162	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277252	1.00[EUR][1000 genomes]
rs12112310	1.00[ASN][1000 genomes]
rs12112671	1.00[EUR][1000 genomes]
rs17159980	1.00[EUR][1000 genomes]
rs17160084	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1868588	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2060636	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28435304	1.00[EUR][1000 genomes]
rs28546198	1.00[ASN][1000 genomes]
rs28560010	1.00[ASN][1000 genomes]
rs28584529	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28601694	1.00[EUR][1000 genomes]
rs28603026	1.00[ASN][1000 genomes]
rs28624855	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28722087	1.00[ASN][1000 genomes]
rs6964755	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6965803	1.00[EUR][1000 genomes]
rs6968530	1.00[EUR][1000 genomes]
rs6968845	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6973297	1.00[ASN][1000 genomes]
rs6973345	0.82[AMR][1000 genomes]
rs73196918	1.00[ASN][1000 genomes]
rs7341402	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73718117	1.00[EUR][1000 genomes]
rs73718119	1.00[EUR][1000 genomes]
rs73718127	1.00[ASN][1000 genomes]
rs73718130	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7777041	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7778342	1.00[EUR][1000 genomes]
rs7798366	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7800661	1.00[ASN][1000 genomes]
rs7806160	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	esv1794529	chr7:112400060-112588376	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2754368	chr7:112483049-112588049	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2758131	chr7:112492127-112768628	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2759556	chr7:112492127-112768628	Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv3692941	chr7:112571420-112614215	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	esv1795316	chr7:112577657-112588734	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv1027981	chr7:112577657-112613212	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
9	nsv1020911	chr7:112581515-112615249	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112581000-112584000	Weak transcription	Fetal Brain Male	brain
2	chr7:112581000-112585200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr7:112581000-112585200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:112581000-112593800	Weak transcription	Left Ventricle	heart
5	chr7:112581400-112584600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr7:112583600-112583800	Enhancers	Placenta	Placenta
7	chr7:112583600-112583800	Enhancers	Placenta Amnion	Placenta Amnion

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