Variant report

Variant	rs73718138
Chromosome Location	chr7:112592010-112592011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10233800	0.88[AMR][1000 genomes]
rs10236439	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10236707	1.00[AMR][1000 genomes]
rs10237085	1.00[AMR][1000 genomes]
rs10240478	1.00[AMR][1000 genomes]
rs10241725	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10247997	0.82[AMR][1000 genomes]
rs10252311	1.00[AMR][1000 genomes]
rs10259048	1.00[AMR][1000 genomes]
rs10263057	1.00[AMR][1000 genomes]
rs10269437	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277476	1.00[AMR][1000 genomes]
rs10279386	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10280036	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10280117	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441329	1.00[AMR][1000 genomes]
rs28378392	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28542840	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28589798	1.00[AMR][1000 genomes]
rs28634829	1.00[AMR][1000 genomes]
rs28832579	1.00[AMR][1000 genomes]
rs500280	0.83[AMR][1000 genomes]
rs59569539	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61680362	0.87[AMR][1000 genomes]
rs73718120	0.87[AMR][1000 genomes]
rs73718121	1.00[AMR][1000 genomes]
rs73718123	1.00[AMR][1000 genomes]
rs73718124	1.00[AMR][1000 genomes]
rs73718131	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718132	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718133	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718141	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9648966	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758131	chr7:112492127-112768628	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2759556	chr7:112492127-112768628	Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3692941	chr7:112571420-112614215	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv1027981	chr7:112577657-112613212	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	nsv1020911	chr7:112581515-112615249	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112581000-112593800	Weak transcription	Left Ventricle	heart

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